Project Name	Stars	Most Recent Commit	Open Issues	License	Language
Tadbit	89	a year ago	58	gpl-3.0	Python
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Workshop Rnaseq	30	7 months ago	1	gpl-3.0	CSS
Workshop • Analysis of RNA-seq data
Ngsparalog	9	6 months ago	1	gpl-3.0	C++
Copy number variation detection using NGS data.
Pcap Core	6	3 years ago	7	gpl-2.0	Perl
NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)
Fastq To Bam	5	2 years ago	4	gpl-3.0	Shell
Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

Alternatives To Ngsparalog

Select To Compare

Tadbit ⭐ 89

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

most recent commit a year ago

Workshop Rnaseq ⭐ 30

Workshop • Analysis of RNA-seq data

most recent commit 7 months ago

Ngsparalog ⭐ 9

Copy number variation detection using NGS data.

most recent commit 6 months ago

Pcap Core ⭐ 6

NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)

most recent commit 3 years ago

Fastq To Bam ⭐ 5

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

most recent commit 2 years ago

Suggest An Alternative To ngsParalog

Alternative Project Comparisons

Ngsparalog vs Tadbit

Ngsparalog vs Workshop Rnaseq

Ngsparalog vs Pcap Core

Ngsparalog vs Fastq To Bam

Popular Ngs Projects

Deepvariant ⭐ 2,978

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

most recent commit 5 months ago

Fastp ⭐ 1,602

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.

total releases 1latest release December 15, 2021most recent commit 7 months ago

Gatk ⭐ 1,576

Official code repository for GATK versions 4 and up

dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago

Ngs ⭐ 1,252

Next Generation Shell (NGS)

most recent commit 3 months ago

Galaxy ⭐ 1,211

Data intensive science for everyone.

dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months ago

Popular Mapping Projects

Awesome Java ⭐ 38,906

A curated list of awesome frameworks, libraries and software for the Java programming language.

most recent commit 3 months ago

Vimium ⭐ 21,541

The hacker's browser.

most recent commit 3 months ago

Pythonrobotics ⭐ 21,528

Python sample codes for robotics algorithms.

most recent commit 19 days ago

Swiftguide ⭐ 15,826

Swift Featured Projects in brain Mapping

most recent commit a year ago

3d Game Shaders For Beginners ⭐ 15,637

🎮 A step-by-step guide to implementing SSAO, depth of field, lighting, normal mapping, and more for your 3D game.

most recent commit 10 months ago

Popular Science Categories