Fastq To Bam
Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Uncalled | 507 | 5 months ago | 18 | mit | C++ | |||||
| Raw nanopore signal mapper that enables real-time targeted sequencing | ||||||||||
| Sniffles | 479 | 3 months ago | 8 | July 27, 2023 | 95 | mit | Python | |||
| Structural variation caller using third generation sequencing | ||||||||||
| Mirdeep2 | 120 | 5 months ago | 2 | gpl-3.0 | Perl | |||||
| Discovering known and novel miRNAs from small RNA sequencing data | ||||||||||
| Wally | 86 | 3 months ago | 1 | bsd-3-clause | C++ | |||||
| Wally: Visualization of aligned sequencing reads and contigs | ||||||||||
| Rampart | 76 |  | 2 | 7 months ago | 1 | July 29, 2019 | 44 | gpl-3.0 | JavaScript | |
| Read Assignment, Mapping, and Phylogenetic Analysis in Real Time | ||||||||||
| Pblat | 37 | a year ago | 5 | other | C | |||||
| parallelized blat with multi-threads support | ||||||||||
| Lordfast | 31 | 5 years ago | 7 | gpl-3.0 | C | |||||
| Sensitive and Fast Alignment Search Tool for Long Read sequencing Data. | ||||||||||
| Mageri | 19 | 7 years ago | 10 | apache-2.0 | Java | |||||
| MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers | ||||||||||
| Sequencing_for_genetics | 11 | 4 years ago | ||||||||
| 유전학자를 위한 시퀀싱 자료 분석 | ||||||||||
| Scbs Map | 11 | 3 years ago | 1 | Perl | ||||||
| Single-cell Bisulfite Sequencing Data Mapping | ||||||||||
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