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Deepvariant Alternatives

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Alternatives To Deepvariant
Project NameStarsDownloadsRepos Using ThisPackages Using ThisMost Recent CommitTotal ReleasesLatest ReleaseOpen IssuesLicenseLanguage
Deepvariant2,978
a year ago8bsd-3-clausePython
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Galaxy1,211pypi galaxy-util} Downloads223a year ago30December 08, 20232,169otherPython
Data intensive science for everyone.
Htsjdk27117087a year ago78October 13, 2023303Java
A Java API for high-throughput sequencing data (HTS) formats.
Shasta269
2 years agootherC++
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
Comp Genomics Class236
3 years ago4gpl-2.0Jupyter Notebook
Code and examples for JHU Computational Genomics class
Pycoqc213
a year ago50December 16, 202014gpl-3.0Python
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Ugene190
a year ago6gpl-2.0C++
UGENE is free open-source cross-platform bioinformatics software
Genomics154
2 years ago2R
A collection of scripts and notes related to genomics and bioinformatics
Tcga_example135
6 years ago1HTML
Dna Seq Analysis128
2 years agoShell
DNA sequencing analysis notes from Ming Tang
Alternatives To Deepvariant
Select To Compare
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit a year agopypi galaxy-util} Downloads
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit a year ago
Tcga_example ⭐ 135
most recent commit 6 years ago


Suggest An Alternative To deepvariant
Alternative Project Comparisons
Deepvariant vs Galaxy
Deepvariant vs Htsjdk
Deepvariant vs Shasta
Deepvariant vs Comp Genomics Class
Deepvariant vs Pycoqc
Deepvariant vs Ugene
Deepvariant vs Genomics
Deepvariant vs Tcga_example
Deepvariant vs Dna Seq Analysis
Popular Sequencing Projects
Picard ⭐ 914
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
dependent packages 12total releases 176latest release November 14, 2023most recent commit a year ago
Popular Dna Projects
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58latest release February 13, 2023most recent commit a year agopypi biopython} Downloads
Exceldna ⭐ 1,166
Excel-DNA - Free and easy .NET for Excel. This repository contains the core Excel-DNA library.
dependent packages 31total releases 61latest release November 27, 2023most recent commit a year agonuget ExcelDna.Integration} Downloads
Khmer ⭐ 729
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
dependent packages 7total releases 18latest release December 15, 2021most recent commit 2 years agopypi khmer} Downloads
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