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825 search results found
Biopython
⭐
3,918
Official git repository for Biopython (originally converted from CVS)
Deepvariant
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2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Gatk
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1,576
Official code repository for GATK versions 4 and up
Galaxy
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1,211
Data intensive science for everyone.
Exceldna
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1,166
Excel-DNA - Free and easy .NET for Excel. This repository contains the core Excel-DNA library.
Vg
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1,066
tools for working with genome variation graphs
Diamond
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900
Accelerated BLAST compatible local sequence aligner.
Khmer
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729
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Netprog_basics
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682
Code, Examples, and Resources for the Network Programmability Basics Video Course
Nucleus
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675
Python and C++ code for reading and writing genomics data.
Poly
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620
A Go package for engineering organisms.
Chip Seq Analysis
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586
ChIP-seq analysis notes from Ming Tang
Dnafeaturesviewer
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500
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
Pyfaidx
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427
Efficient pythonic random access to fasta subsequences
Jellyfish
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419
A fast multi-threaded k-mer counter
Pyrosetta.notebooks
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399
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Icewater
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378
16,432 Free Yara rules created by
Dna2json
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357
Formats your genome file as JSON
Genomicspapers
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350
The Leek group guide to genomics papers
Scg_lib_structs
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350
Collections of library structure and sequence of popular single cell genomic methods
Bismark
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335
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Dna
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325
dna, dart native access. A lightweight dart to native super channel plugin, You can use it to invoke any native code directly in contextual and chained dart code.
Dna
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324
dna, dart native access. A lightweight dart to native super channel plugin, You can use it to invoke any native code directly in contextual and chained dart code.
Nyc Dna Software
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307
The source code, acquired by ProPublica, for New York City's Forensic Statistical Tool.
Nucleotide Transformer
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305
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Dna
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301
Distributed Networks Architecture Blockchain
Whatshap
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290
Read-based phasing of genomic variants, also called haplotype assembly
Prolif
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286
Interaction Fingerprints for protein-ligand complexes and more
Htsjdk
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271
A Java API for high-throughput sequencing data (HTS) formats.
Shasta
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269
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
Bio.jl
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256
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
Solo Blog
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241
程序员小吴 - 一起来学算法吧!
Dnaplotlib
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238
DNA plotting library for Python
Comp Genomics Class
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236
Code and examples for JHU Computational Genomics class
Lightdock
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234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Ngsplot
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231
Quick mining and visualization of NGS data by integrating genomic databases
Pycoqc
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213
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Pyfastx
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211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Nanoengineer
⭐
210
open-source nanotech CAD
Janggu
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205
Deep learning infrastructure for genomics
Basset
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195
Convolutional neural network analysis for predicting DNA sequence activity.
Dna 3d Engine
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193
3d engine implementation in DNA code!
Seqviz
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191
a JavaScript DNA, RNA, and protein sequence viewer
Nextclade
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190
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Ugene
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190
UGENE is free open-source cross-platform bioinformatics software
Repeatmasker
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187
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
3d Dna
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176
3D de novo assembly (3D DNA) pipeline
Polygen
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172
genetic algorithm for approximating an image with polygons (Golang)
Dnachisel
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168
✏️ A versatile DNA sequence optimizer
Serval Dna
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168
The Serval Project's core daemon that implements Distributed Numbering Architecture (DNA), MDP, VoMP, Rhizome, MeshMS, etc.
Aligngraph
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165
Algorithm for secondary de novo genome assembly guided by closely related references
Lastz
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159
Program for aligning DNA sequences, a pairwise aligner.
Vartrix
⭐
158
Single-Cell Genotyping Tool
Genomics
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154
A collection of scripts and notes related to genomics and bioinformatics
Intellisense
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152
Add in-sheet IntelliSense for Excel UDFs
Opendnd
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147
This is the main collection of OpenDnD Tools with generators for persons, dynasties, cities, towns, and more
Dne Dna Code
⭐
146
Provides code examples for DevNet Test Drive Catalyst (DNA) series
Spth
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143
Second Part To Hell's artworks: artificial (life/evolution/intelligence)
Gpn
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141
Genomic Pre-trained Network
Pydna
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140
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Dna Fountain
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139
DNA-Fountain
Dna Seq Gatk Variant Calling
⭐
138
This Snakemake pipeline implements the GATK best-practices workflow
Tcga_example
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135
Crisp Dna
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132
The inner workings of a rather different consulting company.
Dna Seq Analysis
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128
DNA sequencing analysis notes from Ming Tang
Danq
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127
A hybrid convolutional and recurrent neural network for predicting the function of DNA sequences
Breseq
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126
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.
Primer3
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125
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
Blazor Hackathon
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125
Blazor is now official and is part of the ASP.NET Core Framework. All the work is tracked in the dotnet/aspnetcore repo.
Branch
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122
Boosting RNA-Seq assemblies with partial or related genomic sequences
Dnanalyzer
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122
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
Dna
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121
Discourse Network Analyzer (DNA)
Docs
⭐
120
Documentation of the Snakemake-Workflows project
Gena_lm
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120
GENA-LM is a transformer masked language model trained on human DNA sequence.
Copykat
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117
Ui Dna
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115
programmable and semantically UI design tool for Photoshop
Chiron
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114
A basecaller for Oxford Nanopore Technologies' sequencers
Lineage
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114
tools for genetic genealogy and the analysis of consumer DNA test results
Eager
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112
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Ingan
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111
Official code for the paper "InGAN: Capturing and Retargeting the DNA of a Natural Image"
Angularplasmid
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110
DNA Plasmid Visualization Component using AngularJS
Awesome Synthetic Biology
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110
A curated list of Synthetic Biology / Genetic Engineering projects, articles and resources. The main idea is that everyone can contribute here, so we can have a central repository of informations about this fascinating subject that we all can keep up-to-date.
Deepcpg
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108
Deep neural networks for predicting CpG methylation
Optitype
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106
Precision HLA typing from next-generation sequencing data
Buddysuite
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105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Polyply_1.0
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103
Generate input parameters and coordinates for atomistic and coarse-grained simulations of polymers, ssDNA, and carbohydrates
Regtools
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103
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
Phageparser
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101
A project to extract CRISPR information from open genetic data.
Bioblender
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98
AddOn for Blender to do molecular work
The Biohacking Bible
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97
💊 💊 💊 💊 💊 Lots of resources on the world of Biohacking, Genetic Editing, Biology, Bacteria, DNA, CRISPR, Cas9, Plasmids, Antibiotics, PCR, and moooreeeee... 💊 💊 💊 💊 💊 IN CELL WE TRUST!!! 💊 💊 💊 💊 💊
Alv
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95
A console-based alignment viewer
Fasta36
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95
Git repository for FASTA36 sequence comparison software
Learn_synthetic_biology
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94
Fastq.bio
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93
An interactive web tool for quality control of DNA sequencing data
Aliview
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93
Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
Evolve
⭐
90
Image vectorizer throught evolution
Gentle2
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90
GENtle2 - Web-Based DNA Editor for Synthetic Biology
Cljam
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87
A DNA Sequence Alignment/Map (SAM) library for Clojure
Deepmod
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86
DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
Dna
⭐
86
The DNA of Nicholas Cerminara
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