Aligngraph
Algorithm for secondary de novo genome assembly guided by closely related references
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Deepvariant | 2,978 | 4 months ago | 8 | bsd-3-clause | Python | |||||
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
| Gatk | 1,576 | 2 | a month ago | 46 | March 16, 2023 | 1,299 | other | Java | ||
| Official code repository for GATK versions 4 and up | ||||||||||
| Vg | 1,022 | 3 months ago | 760 | other | C++ | |||||
| tools for working with genome variation graphs | ||||||||||
| Dna2json | 357 |  | 7 | 4 | 7 years ago | 14 | July 13, 2017 | 3 | mit | JavaScript |
| Formats your genome file as JSON | ||||||||||
| Bismark | 335 | 7 months ago | 2 | gpl-3.0 | HTML | |||||
| A tool to map bisulfite converted sequence reads and determine cytosine methylation states | ||||||||||
| Ngsplot | 231 | a year ago | 55 | other | R | |||||
| Quick mining and visualization of NGS data by integrating genomic databases | ||||||||||
| Pyfastx | 211 |  | 3 | 20 | 5 months ago | 68 | November 25, 2023 | 20 | mit | C |
| a python package for fast random access to sequences from plain and gzipped FASTA/Q files | ||||||||||
| Basset | 195 | 4 years ago | 13 | mit | Jupyter Notebook | |||||
| Convolutional neural network analysis for predicting DNA sequence activity. | ||||||||||
| Aligngraph | 165 | 4 years ago | 35 | C++ | ||||||
| Algorithm for secondary de novo genome assembly guided by closely related references | ||||||||||
| Dna Seq Analysis | 128 | a year ago | Shell | |||||||
| DNA sequencing analysis notes from Ming Tang | ||||||||||
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