Nucleus
Python and C++ code for reading and writing genomics data.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Deepvariant | 2,978 | 5 months ago | 8 | bsd-3-clause | Python | |||||
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
| Nucleus | 675 | | 2 | 3 years ago | 18 | August 31, 2021 | 1 | other | C++ | |
| Python and C++ code for reading and writing genomics data. | ||||||||||
| Janggu | 205 | 3 years ago | 19 | August 04, 2020 | gpl-3.0 | Jupyter Notebook | ||||
| Deep learning infrastructure for genomics | ||||||||||
| Bigbio | 54 | 7 years ago | 3 | Jupyter Notebook | ||||||
| Genomic_benchmarks | 52 | 5 months ago | 8 | August 10, 2022 | 7 | apache-2.0 | Jupyter Notebook | |||
| Benchmarks for classification of genomic sequences | ||||||||||
| Dietnet | 15 | 7 years ago | 2 | Python | ||||||
| Diet networks in TensorFlow | ||||||||||
| Mantis Ml Release | 15 | 4 years ago | 12 | August 13, 2020 | mpl-2.0 | Python | ||||
| mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens | ||||||||||
| Jarvis | 9 | 2 years ago | 1 | mpl-2.0 | HTML | |||||
| JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes | ||||||||||
| Deepbio | 8 | 4 years ago | mit | |||||||
| This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to biomedicine. Feel free to make a pull request to contribute to this list. | ||||||||||
| Tensorflow_tutorial_genomics | 5 | 6 years ago | Jupyter Notebook | |||||||
| A collection of TensorFlow tutorials to analyze genomics datasets | ||||||||||
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