Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Vcf Open Source Projects

Open source projects categorized as Vcf
Categories > Science > Vcf
Vg ⭐ 1,022
tools for working with genome variation graphs
most recent commit 3 months ago
Picard ⭐ 914
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
dependent packages 12total releases 176most recent commit 3 months ago
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11most recent commit a month agocargo hts-sys} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18most recent commit 3 years agopypi google-nucleus} Downloads
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1most recent commit 2 years ago
Nanopolish ⭐ 496
Signal-level algorithms for MinION data
most recent commit 9 months ago
Vcard ⭐ 463
This vCard PHP library can easily parse or generate/export vCards as .vcf
dependent packages 10total releases 30most recent commit 6 months agopackagist jeroendesloovere/vcard} Downloads
Samplot ⭐ 458
Plot structural variant signals from many BAMs and CRAMs
total releases 3most recent commit 5 months ago
Vcftools ⭐ 415
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
most recent commit a year ago
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Cyvcf2 ⭐ 345
cython + htslib == fast VCF and BCF processing
dependent packages 46total releases 90most recent commit 3 months agopypi cyvcf2} Downloads
Vcfanno ⭐ 334
annotate a VCF with other VCFs/BEDs/tabixed files
dependent packages 1total releases 41most recent commit 5 months ago
Vcf2maf ⭐ 305
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
most recent commit a year ago
Survivor ⭐ 299
Toolset for SV simulation, comparison and filtering
most recent commit 5 months ago
Igv Reports ⭐ 298
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
total releases 25most recent commit 4 months ago
Truvari ⭐ 284
Structural variant toolkit for VCFs
total releases 23most recent commit 17 days ago
Hap.py ⭐ 283
Haplotype VCF comparison tools
most recent commit 2 years ago
Genomics_general ⭐ 279
General tools for genomic analyses.
most recent commit 3 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Rtg Tools ⭐ 260
RTG Tools: Utilities for accurate VCF comparison and manipulation
most recent commit 3 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Pcgr ⭐ 234
Personal Cancer Genome Reporter (PCGR)
most recent commit 6 months ago
The 10 Most Depended On Vcf Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Cyvcf2 ⭐ 345
cython + htslib == fast VCF and BCF processing
dependent packages 46total releases 90latest release December 11, 2023most recent commit 3 months agopypi cyvcf2} Downloads
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16latest release December 08, 2023most recent commit 5 months ago
Vcfpy ⭐ 78
Python 3 library with good support for both reading and writing VCF
dependent packages 17total releases 24latest release November 28, 2022most recent commit 3 months agopypi vcfpy} Downloads
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Node Vcf ⭐ 95
A not so forgiving vCard / vcf parser
dependent packages 16total releases 20latest release February 02, 2022most recent commit 4 months agonpm vcf} Downloads
Picard ⭐ 914
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
dependent packages 12total releases 176latest release November 14, 2023most recent commit 3 months ago
Vpim ⭐ 133
vCard and iCalendar support for ruby
dependent packages 12total releases 12latest release November 11, 2013most recent commit 2 years agorubygems vpim} Downloads
Vcfgo ⭐ 55
a golang library to read, write and manipulate files in the variant call format.
dependent packages 10total releases 1latest release November 28, 2022most recent commit a year ago
The 10 Latest Releases In Vcf Open Source Projects
Cyvcf2 ⭐ 345
cython + htslib == fast VCF and BCF processing
dependent packages 46total releases 90latest release December 11, 2023most recent commit 3 months agopypi cyvcf2} Downloads
Vcfr ⭐ 225
Tools to work with variant call format files
dependent packages 29total releases 16latest release December 08, 2023most recent commit 5 months ago
Rnaindel ⭐ 20
Somatic indel discovery tool for tumor RNA-Seq data.
total releases 22latest release November 27, 2023most recent commit 3 months ago
Nimpress ⭐ 9
Polygenic score calculation from VCF in Nim.
latest release November 27, 2023most recent commit 3 years ago
Picard ⭐ 914
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
dependent packages 12total releases 176latest release November 14, 2023most recent commit 3 months ago
Vcards ⭐ 12
.NET library to read, write, and convert VCF files that match the vCard standards 2.1, 3.0, and 4.0
dependent packages 1total releases 28latest release November 07, 2023most recent commit 5 months agonuget FolkerKinzel.VCards} Downloads
Popular Science Categories
Physics
Genome
Scientific
Medical
Genomics
Sequencing
Molecule
Evolution
Astronomy
Dna
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.