Picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Picard | 914 | 17 | 12 | 3 months ago | 176 | November 14, 2023 | 224 | mit | Java | |
| A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. | ||||||||||
| Truvari | 284 | 16 days ago | 23 | August 07, 2023 | mit | Python | ||||
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| Htsjdk | 271 | 170 | 87 | 4 months ago | 78 | October 13, 2023 | 303 | Java | ||
| A Java API for high-throughput sequencing data (HTS) formats. | ||||||||||
| Genomics | 154 | 2 years ago | 2 | R | ||||||
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| Parliament2 | 83 | 3 years ago | 30 | apache-2.0 | Python | |||||
| Runs a combination of tools to generate structural variant calls on whole-genome sequencing data | ||||||||||
| Neat Genreads | 72 | 3 years ago | 25 | other | Python | |||||
| NEAT read simulation tools | ||||||||||
| Opengene.jl | 61 | 2 years ago | 8 | other | Julia | |||||
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| Sv Plaudit | 47 | 2 years ago | 7 | mit | Shell | |||||
| Pipeline for structural variant image curation and analysis. | ||||||||||
| Snpsplit | 43 | a year ago | 2 | gpl-3.0 | Perl | |||||
| Allele-specific alignment sorting | ||||||||||
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Java
Sequencing
Vcf