Awesome Open Source
Awesome Open Source
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The Top 19 Genome Open Source Projects

Categories > Science > Genome
Iamdinosaur ⭐ 2,745
🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus
Deepvariant ⭐ 2,202
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Gatk ⭐ 988
Official code repository for GATK versions 4 and up
Ai Programmer ⭐ 946
Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149
Mosdepth ⭐ 373
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Pygeno ⭐ 259
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Abyss ⭐ 218
🔬 Assemble large genomes using short reads
Genomepy ⭐ 207
Download and use genomes the easy way.
Karyoploter ⭐ 190
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
Genometools ⭐ 184
GenomeTools genome analysis system.
Ribbon ⭐ 181
A genome browser that shows long reads and complex variants better
Soapdenovo2 ⭐ 150
Next generation sequencing reads de novo assembler.
Viral Ngs ⭐ 149
Viral genomics analysis pipelines
Biomartr ⭐ 144
Genomic Data Retrieval with R
Masurca ⭐ 127
Augustus ⭐ 127
Genome annotation with AUGUSTUS
Arcs ⭐ 67
🌈Scaffold genome sequence assemblies using linked read sequencing data
16gt ⭐ 26
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
Metacache ⭐ 26
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
1-19 of 19 projects
Advertising 📦 10
All Projects
Application Programming Interfaces 📦 124
Applications 📦 192
Artificial Intelligence 📦 78
Blockchain 📦 73
Build Tools 📦 113
Cloud Computing 📦 80
Code Quality 📦 28
Collaboration 📦 32
Command Line Interface 📦 49
Community 📦 83
Companies 📦 60
Compilers 📦 63
Computer Science 📦 80
Configuration Management 📦 42
Content Management 📦 175
Control Flow 📦 213
Data Formats 📦 78
Data Processing 📦 276
Data Storage 📦 135
Economics 📦 64
Frameworks 📦 215
Games 📦 129
Graphics 📦 110
Hardware 📦 152
Integrated Development Environments 📦 49
Learning Resources 📦 166
Legal 📦 29
Libraries 📦 129
Lists Of Projects 📦 22
Machine Learning 📦 347
Mapping 📦 64
Marketing 📦 15
Mathematics 📦 55
Media 📦 239
Messaging 📦 98
Networking 📦 315
Operating Systems 📦 89
Operations 📦 121
Package Managers 📦 55
Programming Languages 📦 245
Runtime Environments 📦 100
Science 📦 42
Security 📦 396
Social Media 📦 27
Software Architecture 📦 72
Software Development 📦 72
Software Performance 📦 58
Software Quality 📦 133
Text Editors 📦 49
Text Processing 📦 136
User Interface 📦 330
User Interface Components 📦 514
Version Control 📦 30
Virtualization 📦 71
Web Browsers 📦 42
Web Servers 📦 26
Web User Interface 📦 210