Awesome Open Source
Awesome Open Source
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The Top 20 Genome Open Source Projects
Categories
>
Science
>
Genome
Iamdinosaur
⭐
2,751
🦄 An Artificial Inteligence to teach Google's Dinosaur to jump cactus
Deepvariant
⭐
2,257
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Gatk
⭐
1,032
Official code repository for GATK versions 4 and up
Ai Programmer
⭐
954
Using artificial intelligence and genetic algorithms to automatically write programs. Tutorial: http://www.primaryobjects.com/cms/article149
Mosdepth
⭐
385
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Pygeno
⭐
263
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Abyss
⭐
222
🔬 Assemble large genomes using short reads
Genomepy
⭐
210
Download and use genomes the easy way.
Karyoploter
⭐
195
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
Genometools
⭐
192
GenomeTools genome analysis system.
Ribbon
⭐
189
A genome browser that shows long reads and complex variants better
Soapdenovo2
⭐
158
Next generation sequencing reads de novo assembler.
Viral Ngs
⭐
155
Viral genomics analysis pipelines
Biomartr
⭐
149
Genomic Data Retrieval with R
Masurca
⭐
134
Augustus
⭐
129
Genome annotation with AUGUSTUS
Arcs
⭐
68
🌈Scaffold genome sequence assemblies using linked read sequencing data
Pblat
⭐
32
parallelized blat with multi-threads support
16gt
⭐
26
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
Metacache
⭐
26
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
1-20 of 20 projects
Advertising
📦 10
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📦 124
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📦 192
Artificial Intelligence
📦 78
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📦 73
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📦 113
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📦 80
Code Quality
📦 28
Collaboration
📦 32
Command Line Interface
📦 49
Community
📦 83
Companies
📦 60
Compilers
📦 63
Computer Science
📦 80
Configuration Management
📦 42
Content Management
📦 175
Control Flow
📦 213
Data Formats
📦 78
Data Processing
📦 276
Data Storage
📦 135
Economics
📦 64
Frameworks
📦 215
Games
📦 129
Graphics
📦 110
Hardware
📦 152
Integrated Development Environments
📦 49
Learning Resources
📦 166
Legal
📦 29
Libraries
📦 129
Lists Of Projects
📦 22
Machine Learning
📦 347
Mapping
📦 64
Marketing
📦 15
Mathematics
📦 55
Media
📦 239
Messaging
📦 98
Networking
📦 315
Operating Systems
📦 89
Operations
📦 121
Package Managers
📦 55
Programming Languages
📦 245
Runtime Environments
📦 100
Science
📦 42
Security
📦 396
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📦 27
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📦 72
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📦 330
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