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The Top 10 Genomics Open Source Projects
Open source projects categorized as Genomics
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Genomics
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biopython/biopython
⭐
3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages
0
total releases
0
most recent commit
over 2 years ago
google/deepvariant
⭐
2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
satijalab/seurat
⭐
2,025
R toolkit for single cell genomics
dependent packages
0
total releases
0
most recent commit
over 2 years ago
hussius/deeplearning-biology
⭐
1,846
A list of deep learning implementations in biology
dependent packages
0
total releases
0
most recent commit
about 3 years ago
lh3/minimap2
⭐
1,613
A versatile pairwise aligner for genomic and spliced nucleotide sequences
dependent packages
0
total releases
0
most recent commit
over 2 years ago
broadinstitute/gatk
⭐
1,549
Official code repository for GATK versions 4 and up
dependent packages
0
total releases
0
most recent commit
over 2 years ago
lh3/bwa
⭐
1,282
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
dependent packages
0
total releases
0
most recent commit
about 3 years ago
materialsproject/pymatgen
⭐
1,254
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines classes for structures and molecules with support for many electronic structure codes. It powers the Materials Project.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
galaxyproject/galaxy
⭐
1,211
Data intensive science for everyone.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
greenelab/deep-review
⭐
1,186
A collaboratively written review paper on deep learning, genomics, and precision medicine
dependent packages
0
total releases
0
most recent commit
over 4 years ago
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