Galaxy
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Nextflow | 2,155 | 16 | 7 hours ago | 243 | August 17, 2023 | 270 | apache-2.0 | Groovy | ||
| A DSL for data-driven computational pipelines | ||||||||||
| Scispacy | 1,479 |  | 6 | 24 | 15 days ago | 13 | September 07, 2022 | 34 | apache-2.0 | Python |
| A full spaCy pipeline and models for scientific/biomedical documents. | ||||||||||
| Galaxy | 1,155 | | 2 | 22 | 7 hours ago | 25 | July 30, 2023 | 2,100 | other | Python |
| Data intensive science for everyone. | ||||||||||
| Scipipe | 1,010 | 2 months ago | 47 | October 14, 2021 | 51 | mit | Go | |||
| Robust, flexible and resource-efficient pipelines using Go and the commandline | ||||||||||
| Rush | 767 | 17 days ago | 26 | April 30, 2021 | 4 | mit | Go | |||
| A cross-platform command-line tool for executing jobs in parallel | ||||||||||
| Juicer | 313 | 8 months ago | 40 | mit | Shell | |||||
| A One-Click System for Analyzing Loop-Resolution Hi-C Experiments | ||||||||||
| Sarek | 273 | 8 days ago | 133 | mit | Nextflow | |||||
| Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing | ||||||||||
| Bedops | 244 | a year ago | 1 | March 03, 2021 | 17 | other | C | |||
| :microscope: BEDOPS: high-performance genomic feature operations | ||||||||||
| Bpipe | 219 | 4 days ago | 155 | other | Groovy | |||||
| Bpipe - a tool for running and managing bioinformatics pipelines | ||||||||||
| Tools | 193 |  | 2 | 2 days ago | 37 | December 19, 2022 | 179 | mit | Python | |
| Python package with helper tools for the nf-core community. | ||||||||||
The latest information about Galaxy can be found on the Galaxy Community Hub.
Community support is available at Galaxy Help.
Galaxy Quickstart
Galaxy requires Python 3.7 . To check your Python version, run:
$ python -V
Python 3.7.6
Start Galaxy:
$ sh run.sh
Once Galaxy completes startup, you should be able to view Galaxy in your browser at: http://localhost:8080
For more installation details please see: https://getgalaxy.org/
Documentation is available at: https://docs.galaxyproject.org/
Tutorials on how to use Galaxy, perform scientific analyses with it, develop Galaxy and its tools, and admin a Galaxy server are at: https://training.galaxyproject.org/
Tools
Tools can be either installed from the Tool Shed or added manually.
For details please see the tutorial.
Note that not all dependencies for the tools provided in the
tool_conf.xml.sample are included. To install them please visit
"Manage dependencies" in the admin interface.
Issues and Galaxy Development
Please see CONTRIBUTING.md .
