Awesome Open Source
Awesome Open Source

BEDOPS v2.4.39: high-performance genomic feature operations

Build Status GitHub stars Project license Documentation Status


BEDOPS v2.4.39 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data.

The overview section of the BEDOPS v2.4.39 documentation summarizes the toolkit, functionality and performance enhancements. The reference table offers documentation for all applications and scripts.


Linux Mac OS X Source code


Complete documentation for BEDOPS v2.4.39 tools is available at:


If you use BEDOPS v2.4.39 in your research, please cite the following manuscript:

Shane Neph, M. Scott Kuehn, Alex P. Reynolds, et al.
[BEDOPS: high-performance genomic feature operations
Bioinformatics (2012) 28 (14): 1919-1920.] (


Copyright (C) 2011-2020 Shane J. Neph, M. Scott Kuehn and Alex P. Reynolds

Source code, documentation and media assets released under GNU Public License Version 2 (GPL v2).

Get A Weekly Email With Trending Projects For These Topics
No Spam. Unsubscribe easily at any time.
c-plus-plus (18,756
c (15,505
bioinformatics (278
compression (200
pipeline (177
parallel (143
genomics (116
toolkit (111
conversion (81
set (30