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The Top 23 Ngs Open Source Projects

Open source projects categorized as Ngs
Categories > Science > Ngs
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 4 months ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 6 months ago
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46most recent commit a month ago
Ngs ⭐ 1,252
Next Generation Shell (NGS)
most recent commit 3 months ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Sra Tools ⭐ 1,015
SRA Tools
total releases 1most recent commit 3 months ago
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11most recent commit a month agocargo hts-sys} Downloads
Deeptools ⭐ 644
Tools to process and analyze deep sequencing data.
most recent commit 16 days ago
Awesome Omics ⭐ 536
A collection of awesome things regarding all omics.
most recent commit 3 months ago
Jvarkit ⭐ 440
Java utilities for Bioinformatics
most recent commit 6 months ago
Snakepipes ⭐ 359
Customizable workflows based on snakemake and python for the analysis of NGS data
most recent commit 3 months ago
Bioconvert ⭐ 344
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
total releases 34most recent commit 5 months ago
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16most recent commit 3 months ago
Training Material ⭐ 284
A collection of Galaxy-related training material
most recent commit 3 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago
Ngsplot ⭐ 231
Quick mining and visualization of NGS data by integrating genomic databases
most recent commit a year ago
Python Musicbrainzngs ⭐ 222
Python bindings for Musicbrainz' NGS webservice
dependent packages 1total releases 1most recent commit 2 years ago
Sortmerna ⭐ 220
SortMeRNA: next-generation sequence filtering and alignment tool
most recent commit a month ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Annotsv ⭐ 180
Annotation and Ranking of Structural Variation
most recent commit 3 months ago
Scde ⭐ 163
R package for analyzing single-cell RNA-seq data
most recent commit a year ago
Afterqc ⭐ 157
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
most recent commit 6 years ago
The 10 Most Depended On Ngs Open Source Projects
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Peppy ⭐ 35
Project metadata manager for PEPs in Python
dependent packages 10total releases 44latest release November 28, 2023most recent commit a month agopypi peppy} Downloads
Sequana ⭐ 136
Sequana: a set of Snakemake NGS pipelines
dependent packages 8total releases 90latest release December 06, 2023most recent commit 4 months agopypi sequana} Downloads
Exon ⭐ 20
Exon is an OLAP query engine specifically for biology and life science applications.
dependent packages 4total releases 12latest release November 20, 2023most recent commit 3 months agocargo exon-common} Downloads
Disq ⭐ 31
A library for manipulating bioinformatics sequencing formats in Apache Spark
dependent packages 3total releases 10latest release February 09, 2021most recent commit 8 months ago
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Bamnostic ⭐ 84
a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
dependent packages 2total releases 56latest release April 26, 2023most recent commit a year agopypi bamnostic} Downloads
Gatk ⭐ 1,576
Official code repository for GATK versions 4 and up
dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
The 10 Latest Releases In Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Sequana ⭐ 136
Sequana: a set of Snakemake NGS pipelines
dependent packages 8total releases 90latest release December 06, 2023most recent commit 4 months agopypi sequana} Downloads
Peppy ⭐ 35
Project metadata manager for PEPs in Python
dependent packages 10total releases 44latest release November 28, 2023most recent commit a month agopypi peppy} Downloads
Monsda ⭐ 10
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
total releases 14latest release November 26, 2023most recent commit 5 months ago
Exon ⭐ 20
Exon is an OLAP query engine specifically for biology and life science applications.
dependent packages 4total releases 12latest release November 20, 2023most recent commit 3 months agocargo exon-common} Downloads
Sigalign ⭐ 10
A Similarity-Guided Alignment Algorithm
total releases 7latest release November 10, 2023most recent commit 4 months ago
Oxbow ⭐ 32
Read specialized NGS formats as data frames in R, Python, and more.
dependent packages 2total releases 3latest release October 26, 2023most recent commit 4 months agopypi oxbow} Downloads
Microhapdb ⭐ 7
Portable database of microhaplotype marker and allele frequency data
total releases 13latest release October 26, 2023most recent commit 6 months ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78latest release October 13, 2023most recent commit 4 months ago
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