|Research software impact| |Supported Python versions| |khmer build status| |Test coverage| |BSD-3 licensed|
Welcome to khmer: k-mer counting, filtering, and graph traversal FTW!
The official source code repository is at https://github.com/dib-lab/khmer and project documentation is available online at http://khmer.readthedocs.io. See http://khmer.readthedocs.io/en/stable/introduction.html for an overview of the khmer project.
See http://khmer.readthedocs.io/en/stable/user/getting-help.html for more details, but in brief:
khmer is research software, so you should cite us when you use it in scientific publications!
Please see the
CITATION <http://khmer.readthedocs.io/en/stable/citations.html>__ file for citation information.
The khmer library is a project of the
Lab for Data Intensive Biology <http://ivory.idyll.org/lab/>__ at UC Davis, and includes contributions from its members, collaborators, and friends.
pip install khmer pytest --pyargs khmer -m 'not known_failing and not jenkins and not huge and not linux'
See https://khmer.readthedocs.io/en/stable/user/install.html for more detailed installation instructions.
We welcome contributions to khmer from the community! If you're interested in modifying khmer or contributing to its ongoing development see https://khmer.readthedocs.io/en/stable/dev/getting-started.html.
.. |Research software impact| image:: http://depsy.org/api/package/pypi/khmer/badge.svg :target: http://depsy.org/package/python/khmer .. |Supported Python versions| image:: https://img.shields.io/pypi/pyversions/khmer.svg .. |khmer build status| image:: https://img.shields.io/travis/dib-lab/khmer.svg :target: https://travis-ci.org/dib-lab/khmer .. |Test coverage| image:: https://img.shields.io/codecov/c/github/dib-lab/khmer.svg :target: https://codecov.io/github/dib-lab/khmer .. |BSD-3 licensed| image:: https://img.shields.io/badge/license-BSD%203--Clause-blue.svg :target: https://github.com/dib-lab/khmer/blob/master/LICENSE