Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Deepvariant | 2,978 | 4 months ago | 8 | bsd-3-clause | Python | |||||
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
Gatk | 1,576 | 2 | 13 days ago | 46 | March 16, 2023 | 1,299 | other | Java | ||
Official code repository for GATK versions 4 and up | ||||||||||
Vg | 1,022 | 2 months ago | 760 | other | C++ | |||||
tools for working with genome variation graphs | ||||||||||
Dna2json | 357 | 7 | 4 | 7 years ago | 14 | July 13, 2017 | 3 | mit | JavaScript | |
Formats your genome file as JSON | ||||||||||
Bismark | 335 | 6 months ago | 2 | gpl-3.0 | HTML | |||||
A tool to map bisulfite converted sequence reads and determine cytosine methylation states | ||||||||||
Ngsplot | 231 | a year ago | 55 | other | R | |||||
Quick mining and visualization of NGS data by integrating genomic databases | ||||||||||
Pyfastx | 211 | 3 | 20 | 4 months ago | 68 | November 25, 2023 | 20 | mit | C | |
a python package for fast random access to sequences from plain and gzipped FASTA/Q files | ||||||||||
Basset | 195 | 4 years ago | 13 | mit | Jupyter Notebook | |||||
Convolutional neural network analysis for predicting DNA sequence activity. | ||||||||||
Aligngraph | 165 | 4 years ago | 35 | C++ | ||||||
Algorithm for secondary de novo genome assembly guided by closely related references | ||||||||||
Dna Seq Analysis | 128 | a year ago | Shell | |||||||
DNA sequencing analysis notes from Ming Tang |