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Search results for protein dna
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protein
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65 search results found
Biopython
⭐
3,918
Official git repository for Biopython (originally converted from CVS)
Diamond
⭐
900
Accelerated BLAST compatible local sequence aligner.
Pyfaidx
⭐
427
Efficient pythonic random access to fasta subsequences
Pyrosetta.notebooks
⭐
399
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Prolif
⭐
286
Interaction Fingerprints for protein-ligand complexes and more
Lightdock
⭐
234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Seqviz
⭐
191
a JavaScript DNA, RNA, and protein sequence viewer
Tcga_example
⭐
135
Buddysuite
⭐
105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
Bioblender
⭐
98
AddOn for Blender to do molecular work
Fasta36
⭐
95
Git repository for FASTA36 sequence comparison software
Tcoffee
⭐
77
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
Fm Index
⭐
71
FM-Index full-text index implementation using RRR Wavelet trees (libcds) and fast suffix sorting (libdivsufsort) including experimental results.
Pyfeat
⭐
68
A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences
Crisprcasfinder
⭐
54
A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
Jolecule
⭐
48
Javascript viewer for proteins and DNA with animated views
Bioblender21
⭐
47
Blender plugin to process biological data and molecular work.
Sequence_manipulation_suite
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45
A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
Fluentdna
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43
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Hmmer2go
⭐
36
Annotate DNA sequences for Gene Ontology terms
Naf
⭐
32
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
Gromacs_ff
⭐
31
Trusted force field files for gromacs
Orfipy
⭐
25
Fast and flexible ORF finder
Bioseq.jl
⭐
23
Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences
Rosalind
⭐
22
Rosalind Bioinformatics Problems
Sequencework
⭐
22
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
Rosalind Solutions
⭐
21
my solutions to problems from Rosalind.
Lightdock Python2.7
⭐
20
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Shifted Hamming Distance
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17
Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal paper (2015) by Xin et al. at http://users.ece.cmu.edu/~omutlu/pub/shifted-hammi
Biocpp Core
⭐
16
BioC++ core library (alphabet, meta, ranges)
Open3spn2
⭐
16
An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM
Dna2proteins
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15
A Python script to translate DNA sequences to protein sequences
Emap2secplus
⭐
15
Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning
Dnapacman
⭐
14
waka waka
Hypothesis Bio
⭐
14
Hypothesis extension for computational biology
Awesome Whole Cell Simulation
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12
MOVING TO: https://github.com/cirosantilli/cirosantilli.githu SEE README. Because sometimes you just want to simulate single prokaryotic biological living whole cell models starting from DNA to minute detail to understand how it works and predict simple experimental observations.
Dante
⭐
12
Domain based annotation of transposable elements
Neurobind
⭐
11
Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences
Popscomp
⭐
11
Solvent Accessible Surface Areas of Biomolecules and their Complexes
Rosalind
⭐
11
A repository for my solutions to problems from - http://www.rosalind.info
Gotranseq
⭐
11
convert nucleic sequence in protein sequence
Concordia_workshop_biopython
⭐
11
Pratical to learn basic Biopython usage
Qubism
⭐
10
Self-similar visualization of many-body wavefunctions (and also: time series, DNA, proteins).
Coursera Bioinformatics
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9
My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Finding Mutations in DNA and Proteins; Bioinformatics Capstone: Big Data in Biology)
Srassembler
⭐
9
Selective and Recursive local Assembler
Giraffe
⭐
8
Protein
⭐
8
Simple code generator
Chexmix
⭐
7
ChExMix: the ChIP-exo mixture model
Shd_code
⭐
7
Hydroid
⭐
7
Python package for analyzing hydroxyl-radical footprinting experiments of DNA-protein complexes
Bionode Seq
⭐
7
Module for DNA, RNA and protein sequences manipulation
Gpu Bsw
⭐
6
Nrlb
⭐
6
No Read Left Behind - Software for Motif Discovery from SELEX Data
Varnomen
⭐
6
Gmx_performance_on_hpc
⭐
6
Gromacs performance benchmarking on different HPC platforms
Bioinformaticsfromcoursera
⭐
6
Kspider
⭐
5
A simple yet powerful sequence clustering tool.
Bioinformatics_algorithms
⭐
5
Python code covering some of the algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, finding regulatory motifs, analyzing genome rearrangements, identifying proteins, and many other topics.
Genomics Dl Papers
⭐
5
"The human interpretation of a disability is a primitive departmentalized view of ignorance." ― Alastair Agutter
Mybiotools
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5
Python scripts for biologists
Katas
⭐
5
Code katas
Dima
⭐
5
A command-line tool that analyses the diversity and motifs of protein/nucleotide sequences.
Pse In One
⭐
5
Monoseq
⭐
5
A Python library for pretty-printing DNA and protein sequences using a monospace font
Molbiox
⭐
5
Utilities and protocols for bioinformatics
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