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Search results for interaction protein
interaction
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protein
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62 search results found
Paddlehelix
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729
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
Plip
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320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
Prolif
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286
Interaction Fingerprints for protein-ligand complexes and more
Masif
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196
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
Dtinet
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135
A Network Integration Approach for Drug-Target Interaction Prediction
Compbiodatasetsformachinelearning
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120
A Curated List of Computational Biology Datasets Suitable for Machine Learning
Omnipathr
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80
R client for the OmniPath web service
Cpi_prediction
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80
This is a code for compound-protein interaction (CPI) prediction based on a graph neural network (GNN) for compounds and a convolutional neural network (CNN) for proteins.
Hsm
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58
Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
Seq_ppi
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56
This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Multifaceted Protein-Protein Interaction Prediction Based on Siamese Residual RCNN".
Neodti
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54
NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions
D Script
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49
A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions
Cell2cell
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44
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
Prismnet
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41
Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
Md Ifp
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40
MD trajectory analysis using protein-ligand Interaction Fingerprints
Machine Learning With Ontologies
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39
Pylipid
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37
A python toolkit for analysing membrane protein-lipid interactions.
Monn
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26
MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Proteins
Electrostatics.github.io
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23
APBS & PDB2PQR - software for biomolecular electrostatics and solvation
Drugvqa
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20
Predicting Drug Protein Interaction using Quasi-Visual Question Answering System
Padme
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20
This is the repository containing the source code for my Master's thesis research, about predicting drug-target interaction using deep learning.
Kif
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20
KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.
Pureclip
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20
Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
Tip
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19
TIP: Tri-graph Interaction Propagation model for Polypharmacy Side Effect Prediction (GRL@NeurIPS, 2019)
Netsmooth
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18
netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
Interfacea
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15
An open-source library for the analysis of protein interactions.
Manuscript_ab_epitope_interaction
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14
Smartas
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13
📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.
Pycoevol
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13
A Python workflow to study protein-protein coevolution and interaction
Ppi Typed Relation Extractor
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12
Relation extraction for protein to protein interactions to extraction strongly typed PPI relations.. My research topic.. So work in progress
Prolif
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11
Protein-Ligand Interaction Fingerprints
Pyinteraph
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11
A software research tool for the analysis of structural communication in protein ensembles
Icount
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11
iCount, protein-RNA interaction analytics
Pathlinker
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11
Connect the dots in networks.
Lintools
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11
Python script that creates 2D protein-ligand interaction images
Digger
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11
Exploring Isoform-specific interactions
Lncadeep
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10
LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning
Visbol Js
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9
SBOLv rendering in JavaScript
Ipminer
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9
Predicting ncRNA-protein interaction using high-level features based on deep learning
Pathfx
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8
Most up to date PathFX code
Ponder
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8
PointNet for Deep Rank: protein-protein interaction scoring using neural networks
Struct2graph
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8
A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction
Mastic
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8
Multi-Atom Structure/Selection Toolkit with Interaction Capabilities
Metakappa
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7
A meta-language for Kappa generation that allows the creation of protein hierarchies and the concise representation of protein-interaction rules. These structures can then be expanded into Kappa.
Timearcs
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7
Biocreative Vi Track 5 Chemprot
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7
BioCreative VI — Track 5: text mining chemical–protein interactions
Deepdtnet
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7
Can Ai Do
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7
Predicting or pretending: artificial intelligence for protein-ligand interactions lack of sufficiently large and unbiased datasets
Structureanalyzer
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6
A program analyzing 3D protein structures from PDB to generate 2D binding motifs
Spvec
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6
SPVec: A Word2vec-inspired feature representation method for Drug-Target Interaction Prediction
Rnpfind
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6
Bioinformatics tool for exploring RNA-Protein interactions
Tpp2d
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6
Detection of ligand-protein interactions from thermal proteome profiles (DLPTP) by FDR-controlled analysis of 2D-TPP experiments
Dta_pred
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6
Protein Ligand Binding Affinity Prediction with Deep Learning models
Man
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6
Codes and data for the paper entitled "Learning representations to predict intermolecular interactions on large-scale heterogeneous molecular association network"
Skipgnn
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6
SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks
Predicting Dtis
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5
Employing edge2vec node embedding algorithm to represent the network
Ppaxe
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5
Text mining tool to retrieve protein-protein interactions from the scientific literature.
Hbind
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5
Calculates hydrogen-bond interaction tables for protein-small molecule complexes, based on protein PDB and protonated ligand MOL2 structure input. Raschka et al. (2018) J. Computer-Aided Molec. Design
Deep Learning For Drug Protein Interactions
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5
A Python implementation for training a neural network for predicting drug-protein interactions using Keras and Tensorflow
Rif
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5
Rotamer Interaction Field Python Libraries for Computational Protein Design
Deeplearning.ppi
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5
A deep learning framework for improving protein interaction prediction using sequence properties
Hsm Web
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5
Website associated with the "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
K Core Subgraph
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5
Finding the Highest K-Core Subgraph in a Protein-Protein Interaction Network
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