Awesome Open Source

Programming Languages

Search results for r protein

71 search results found

🚥 Visualizing publication-quality multiple sequence alignment using ggplot2

Das_tool ⭐ 124

netZooR is a network biology package implemented in R.

Omnipathr ⭐ 80

R client for the OmniPath web service

Singlecellseq ⭐ 79

Batch effects and the effective design of single-cell gene expression studies

🧬 An R package for visualizing molecular data in 3D

Peptides ⭐ 71

An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.

🧬 Toolkit for generating various numerical features of protein sequences

Picotti lab data analysis package.

Uniprotr ⭐ 49

Retrieving Information of Proteins from Uniprot

Carnival ⭐ 48

CAusal Reasoning for Network Identification with integer VALue programming in R

Oncoenrichr ⭐ 46

Cancer-dedicated gene set interpretation

Normalize CITEseq Data

R package for Protein activity analysis of single-cell RNAseq.

R package for analysing proteomics data

The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.

Algorithm for Open Data Detection in Publications (ODDPub)

Annotation helper tool for the manual curation of transposable element consensus sequences

Phylostratr ⭐ 28

An R framework for phylostratigraphy

Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.

Metablastr ⭐ 27

Seamless Integration of BLAST Sequence Searches in R

Genoppi: an open-source software for robust and standardized integration of proteomic and genetic data

Frustratometer ⭐ 24

Infinityflow ⭐ 22

Limma Pipeline Proteomics ⭐ 21

LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment

Netsmooth ⭐ 18

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

Proteomics Toolset for Integrative Data Analysis

antimicrobial peptide prediction in R

A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantlab.org/bio3d

Bioinformatics ⭐ 14

Bioinformatics Workflows

Package to calculate functional similarity between genes https://biocor.llrs.dev

Processing and analysis of proteomics data

Drawproteins ⭐ 13

Creating package to draw proteins from Uniprot API

Talk to the NCBI EUtils

SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples

Gene network analysis

Access sequences from the 1000 Plant Initiative (1KP)

Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

Ilc_scrnaseq ⭐ 11

Analysis of single cell RNA-seq data from innate lympoid cells

A gui overlay and extension for MSGFplus

Dms2structure ⭐ 9

Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019

isobar - R library for the Analysis and quantitation of isobarically tagged MSMS proteomics data

Secretsanta ⭐ 9

flexible pipelines for scalable secretome prediction, R package

R package for microbial pangenomics

covid19 exploration

sismonr - Simulation of In Silico Multi-Omic Networks R package

A simple interface to the Human Protein Atlas

Predicting the impact of mutations on protein function

An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics

Spatially-resolved Transcriptomics via Epitope Anchoring

Functional Dark Side.github.io ⭐ 7

Capture Hi-C gene prioritiser

Modulomics ⭐ 7

Infers cancer driver modules from DNA, RNA, PPI and regulatory network.

Chordomics ⭐ 7

Interactive visualisation and data annotation for meta-omics data

Amylogram ⭐ 7

Prediction of amyloid proteins

RNA-binding protein motif analysis

Aa_subtypes ⭐ 7

Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape

Genehummus ⭐ 6

An Automated Pipeline to Classify Gene Families based on Protein Domain Organization using Auxin Response Factors in Legumes as an Example

Ramachandran Plot ⭐ 6

R code & Python code for creating Ramachandran Plot (MAT Feature)

Cancermirnome ⭐ 6

CancerMIRNome - an interactive analysis and visualization database for miRNome profiles of human cancer

Determine minimal Protein set given list of peptide protein mappings and various weighting functions

Call TMHMM from R, to predict transmembrane helices in proteins

Msstatsconvert ⭐ 6

Converter functions for the MSstats package

Detection of ligand-protein interactions from thermal proteome profiles (DLPTP) by FDR-controlled analysis of 2D-TPP experiments

Protein Edm Demo ⭐ 6

🔢🔀 Protein structure modelling using Euclidean distance matrices (EDMs)

Trinotater ⭐ 5

Trinotate annotation report summaries in R

Ccprofiler ⭐ 5

Analysis of co-fractionation MS datasets

Amino acid modifications for mass spectrometry

❗ This is a read-only mirror of the CRAN R package bio3d — Biological Structure Analysis. Homepage: h

Related Searches

R Rstats (2,342)

R Rstudio (1,746)

R Dataset (1,493)

Python Protein (1,344)

Python R (1,244)

R Machine Learning (1,113)

R Visualization (979)

1-71 of 71 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.