Neurobind
Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Jellyfish | 419 | 7 months ago | 90 | other | C++ | |||||
| A fast multi-threaded k-mer counter | ||||||||||
| Dfim | 44 | 5 years ago | 3 | Python | ||||||
| Deep Feature Interaction Maps (DFIM) | ||||||||||
| Oxdna | 32 | 6 months ago | 2 | gpl-3.0 | C++ | |||||
| A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings | ||||||||||
| Rtfbs_db | 21 | 6 years ago | gpl-3.0 | R | ||||||
| Parse TF motifs from public databases, read into R, and scan using 'rtfbs'. | ||||||||||
| Deepbind With Pytorch | 15 | 5 years ago | 1 | Jupyter Notebook | ||||||
| CNN architecture for predicting DNA binding sites for Transcription Factors | ||||||||||
| Tfregulomer | 13 | 2 years ago | gpl-3.0 | R | ||||||
| TFregulomeR reveals transcription factors’ context-specific features and functions | ||||||||||
| Biocnyc | 12 | 6 years ago | HTML | |||||||
| Materials presented at the BiocNYC meet-up | ||||||||||
| Neurobind | 11 | 7 years ago | apache-2.0 | Python | ||||||
| Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences | ||||||||||
| Tffm | 10 | 3 years ago | lgpl-3.0 | Python | ||||||
| TFFM framework | ||||||||||
| Transcriptionfactorprofiling | 8 | 4 years ago | 2 | Python | ||||||
| Profiling of transcription factor binding sites in cell-free DNA | ||||||||||
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