Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Jellyfish | 419 | 5 months ago | 90 | other | C++ | |||||
A fast multi-threaded k-mer counter | ||||||||||
Dfim | 44 | 5 years ago | 3 | Python | ||||||
Deep Feature Interaction Maps (DFIM) | ||||||||||
Oxdna | 32 | 4 months ago | 2 | gpl-3.0 | C++ | |||||
A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings | ||||||||||
Rtfbs_db | 21 | 5 years ago | gpl-3.0 | R | ||||||
Parse TF motifs from public databases, read into R, and scan using 'rtfbs'. | ||||||||||
Deepbind With Pytorch | 15 | 5 years ago | 1 | Jupyter Notebook | ||||||
CNN architecture for predicting DNA binding sites for Transcription Factors | ||||||||||
Tfregulomer | 13 | 2 years ago | gpl-3.0 | R | ||||||
TFregulomeR reveals transcription factors’ context-specific features and functions | ||||||||||
Biocnyc | 12 | 5 years ago | HTML | |||||||
Materials presented at the BiocNYC meet-up | ||||||||||
Neurobind | 11 | 7 years ago | apache-2.0 | Python | ||||||
Yet Another Model Using Neural Networks for Predicting Binding Preferences of for Test DNA Sequences | ||||||||||
Tffm | 10 | 3 years ago | lgpl-3.0 | Python | ||||||
TFFM framework | ||||||||||
Transcriptionfactorprofiling | 8 | 4 years ago | 2 | Python | ||||||
Profiling of transcription factor binding sites in cell-free DNA |