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Search results for genome dna
dna
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genome
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91 search results found
Deepvariant
⭐
2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Gatk
⭐
1,576
Official code repository for GATK versions 4 and up
Vg
⭐
1,022
tools for working with genome variation graphs
Dna2json
⭐
357
Formats your genome file as JSON
Bismark
⭐
335
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Ngsplot
⭐
231
Quick mining and visualization of NGS data by integrating genomic databases
Pyfastx
⭐
211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Basset
⭐
195
Convolutional neural network analysis for predicting DNA sequence activity.
Aligngraph
⭐
165
Algorithm for secondary de novo genome assembly guided by closely related references
Dna Seq Analysis
⭐
128
DNA sequencing analysis notes from Ming Tang
Breseq
⭐
126
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.
Branch
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122
Boosting RNA-Seq assemblies with partial or related genomic sequences
Gena_lm
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120
GENA-LM is a transformer masked language model trained on human DNA sequence.
Eager
⭐
112
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Dna
⭐
86
The DNA of Nicholas Cerminara
Referenceseeker
⭐
85
Rapid determination of appropriate reference genomes.
Verifybamid
⭐
78
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Arv
⭐
75
A fast 23andMe DNA parser and inferrer for Python
Ichorcna
⭐
73
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
Dnabert_2
⭐
72
The official implementation of DNABERT-2.
Dna Traits
⭐
64
A fast 23andMe genome text file parser, now superseded by arv
Catch
⭐
63
A package for designing compact and comprehensive capture probe sets.
Dnaism
⭐
57
Horizon chart js library for DNA data.
Arioc
⭐
54
Arioc: GPU-accelerated DNA short-read alignment
Deepsomatic
⭐
45
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
Fluentdna
⭐
43
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Genomic_tools
⭐
43
Genomic related tools
Genomelake
⭐
37
Simple and efficient access to genomic data for deep learning models.
Batmeth2
⭐
36
BS-seq analysis pipeline
Antonie
⭐
36
Antonie is an integrated, robust, reliable and fast processor of DNA reads
Data_science_in_biology
⭐
35
projects using galaxy, python, linux command line to analyze sequencing data
Qdnaseq
⭐
33
QDNAseq package for Bioconductor
Ltrpred
⭐
31
De novo annotation of young retrotransposons
Ngsdat2
⭐
28
NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)
Nucdiff
⭐
27
In-depth characterization and annotation of differences between two sets of DNA sequences
Vgp Tools
⭐
26
Igenomics
⭐
26
The first app for Mobile DNA Sequence Alignment and Analysis
Gembs
⭐
23
gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).
Mbin
⭐
21
mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
Genome
⭐
17
My genomic data
Chromegcn
⭐
16
Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification
Genoset Norovirus
⭐
14
Determines if a genome is immune to norovirus (rs601338)
Methylsig
⭐
14
R package for DNA methylation analysis
About_giab
⭐
13
An introduction about the Genome-in-a-Bottle project
Ngs_dna
⭐
13
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
Dna
⭐
13
My DNA and its Analysis
Stripenn
⭐
13
Architectural stripe detection from 3D genome conformation data
Hmdna
⭐
13
Dna Sequence Machine Learning
⭐
12
Understand DNA structure and how machine learning can be used to work with DNA sequence data.
Nucleosome_ctdna
⭐
11
Inferring expressed genes by whole-genome sequencing of plasma DNA
Sequencing_for_genetics
⭐
11
유전학자를 위한 시퀀싱 자료 분석
Plot2do
⭐
11
A tool to assess the quality and distribution of genomic data
Methgo
⭐
11
MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data
Nuc_processing
⭐
11
Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools
Dnarm
⭐
10
DNA read mapper will map short reads to the entire genome using all of your cores -- and GPU too
Crisprdesignr
⭐
10
Software used to design guide RNA sequences for CRISPR/Cas9 genome editing
Redclib
⭐
10
Red-C data processing
Biogrinder
⭐
9
Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
Repressivecapacity
⭐
9
Reanalysis of the repressive capacity of promoter DNA methylation
Coursera Bioinformatics
⭐
9
My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Finding Mutations in DNA and Proteins; Bioinformatics Capstone: Big Data in Biology)
Genomic Music
⭐
9
Music from the genome
Gatekeeper
⭐
9
GateKeeper: Fast Alignment Filter for DNA Short Read Mapping
Garlic
⭐
8
FakeSequence is an artificial non-functional realistic DNA sequence generator.
Damage_repair
⭐
8
Genome-wide DNA damage and excision repair maps
Hic Inspector
⭐
8
HiC-inspector, a bioinformatics pipeline to facilitate the analysis of HiC dataset.
Dnaseq_pipeline
⭐
8
Pipeline in place at the UGI for DNA level analysis
Genetic Algorithms
⭐
8
Genetic Algorithms Repository
Nanopore_simulation
⭐
8
Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.
Blss
⭐
8
A suite of unique bioinformatics tools for the brave explorer.
Kameris
⭐
7
A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks
Reffreedma
⭐
7
Reference Genome Independent Differential DNA Methylation Analysis
Acgtrie
⭐
7
A custom Numpy Trie for storing counts of sequences
Chexmix
⭐
7
ChExMix: the ChIP-exo mixture model
Clarity Ext
⭐
6
Extensions for Clarity
Stdlib Sequence
⭐
6
StdLib DNA Sequence Alignment Service
Genesearchr
⭐
6
Fast full-text search in NCBI RefSeq, UniProt-KB and Genome DNA sequence
Epiteome
⭐
6
Simultaneous Detection of Transposable Element Insertion Sites and their DNA Methylation Levels from Plant Genomes
Mea
⭐
6
Bioinformaticsfromcoursera
⭐
6
Opendna
⭐
6
Egf Shared Documents
⭐
6
📚 Shared slideshows, courses, etc. from the EGF
Addtag Project
⭐
6
CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.
Pseudoseq.jl
⭐
6
Fake genomes, fake sequencing, real insights.
Covidgenotyper
⭐
6
Visualization toolkit for SARS-CoV-2 whole genome sequencing data
Methylation_notes
⭐
6
Notes on DNA methylation analysis
Cell Free Dna Reading List
⭐
6
Important papers relating to the biology of cell free DNA
Libis
⭐
5
Bioinformatics_algorithms
⭐
5
Python code covering some of the algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, finding regulatory motifs, analyzing genome rearrangements, identifying proteins, and many other topics.
Nordlund Backlin 2013
⭐
5
Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia
Simulated Evolution
⭐
5
Artificial Life Simulation of Bacteria Motion depending on DNA
Genoset Cli
⭐
5
Adrsm
⭐
5
Ancient DNA Read Simulator for Metagenomic
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1-91 of 91 search results
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