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sequencing
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41 search results found
Getting Started With Genomics Tools And Resources
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991
Unix, R and python tools for genomics and data science
Dna Seq Analysis
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128
DNA sequencing analysis notes from Ming Tang
Tormes
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82
Making whole bacterial genome sequencing data analysis easy
Ngseasy
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76
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
Atacseq
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64
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Sv Plaudit
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47
Pipeline for structural variant image curation and analysis.
Ddocent
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46
a bash pipeline for RAD sequencing
Genome Data Integration
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35
Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
Ctdna Pipeline
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24
A simplified pipeline for ctDNA sequencing data analysis
Assembler Components
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20
Components of genome sequence assembly tools
Automap
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19
Tool to find regions of homozygosity (ROHs) from sequencing data.
Clinicalgradednaseq
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15
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
Proseq2.0
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14
Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing
Ngs_dna
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13
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
Prophage_tracer
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13
Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
Bamtobw
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13
Convert BAM files to bigWig files with a simple command
Angsd Wrapper
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13
Utilities for analyzing next generation sequencing data.
Plws
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11
Phylogenomics from Low-coverage Whole-genome Sequencing
Fqless
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11
less like viewer for fastq files
Deepvariant On Spark
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11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
Cpg_me
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10
A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
Cau Tibetanwheatseq
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10
Customized codes used in Tibetan wheat sequencing project.
Banzai
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10
Scripts for analyzing Illumina-generated environmental DNA sequence data.
Wgs_sample_preparation
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9
Trim, Align to genome, Deduplicate, Realign WGS sequencing samples
Nrex
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8
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Bio598_tutorial
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8
A hands-on tutorial introducing users to reproducible genome reassembly and variant calling
Athlon
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7
Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
Quivergrid
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7
Quiver wrapper for SGE
Wgs
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6
WGS Sequencing In Hadoop MapReduce
Bashbone
⭐
6
A bash/biobash library for workflow and pipeline design
Pangolin
⭐
6
BSSE COVID-19 sequencing of test swab samples
Ngs
⭐
6
Next-generation sequencing analysis pipelines & scrips
Fastq Info
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6
Calculate fastq reads and sequencing coverage
Shell_intro_for_bioinformatics_stg
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6
Intro to Shell for Bioinformatics - with STG examples
Mouseexomesequencing
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6
A pipeline for variant calling from exome sequence data from murine tumors.
Ctdna_wes_pipeline
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5
Pipeline for analysing data from whole-exome sequencing (WES) of circulating tumour DNA (ctDNA)
Lnisks
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5
Gs Preprocess
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5
Microbiome Demo
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5
Demonstration files and scripts for our high-throughput sequencing analysis pipeline
Schloss_pacbio16s_peerj_2015
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5
Repository to accompany "Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system"
Fastq To Bam
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5
Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi
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