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23 search results found

Sniffles ⭐ 479

Structural variation caller using third generation sequencing

Minigraph ⭐ 367

Proof-of-concept seq-to-graph mapper and graph generator

Protein Alignment and Detection Interface

Graph-based mapping of long sequences, noisy or HiFi.

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

Lordfast ⭐ 31

Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.

Workshop Rnaseq ⭐ 30

Workshop • Analysis of RNA-seq data

Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities

A lightweight library for working with PAF (Pairwise mApping Format) files

Echolocator ⭐ 20

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers

Synteny Mapping and Analysis Program

Biobtree ⭐ 13

A bioinformatics tool to search, map and retrieve identifiers, keywords and attributes

BioDWH2 is an easy-to-use, automated, graph-based data warehouse and mapping tool for bioinformatics and medical informatics.

Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop

Mapping-free software for fishing relevant reads in an RNA-Seq sample

Compath Resources ⭐ 7

This repository contains the different resources derived or generated using ComPath

A web application for exploring, analyzing, and curating pathway databases

Lmm Lasso ⭐ 6

An implementation of the Lasso model for association mapping and phenotype prediction which corrects for population strucure (Rakitsch et al., Bioinformatics 2013): http://goo.gl/FRmXwI

Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data

Fastq To Bam ⭐ 5

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

A software package for optical mapping data processing, analysis and visualization

Quality Control, Mapping and Reads Count for RNA-Seq Analysis

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1-23 of 23 search results

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