Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Sniffles | 479 | 4 months ago | 8 | July 27, 2023 | 95 | mit | Python | |||
Structural variation caller using third generation sequencing | ||||||||||
Minigraph | 367 | 5 months ago | 1 | June 21, 2023 | 44 | mit | C | |||
Proof-of-concept seq-to-graph mapper and graph generator | ||||||||||
Paladin | 50 | a year ago | 4 | mit | C | |||||
Protein Alignment and Detection Interface | ||||||||||
Raptor | 50 | 4 years ago | bsd-3-clause-clear | Perl | ||||||
Graph-based mapping of long sequences, noisy or HiFi. | ||||||||||
Dcc | 31 | 2 years ago | 18 | gpl-3.0 | Python | |||||
DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates. | ||||||||||
Lordfast | 31 | 5 years ago | 7 | gpl-3.0 | C | |||||
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data. | ||||||||||
Workshop Rnaseq | 30 | 7 months ago | 1 | gpl-3.0 | CSS | |||||
Workshop • Analysis of RNA-seq data | ||||||||||
Qtip | 23 | 5 years ago | 5 | mit | C++ | |||||
Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities | ||||||||||
Pafpy | 22 | 2 years ago | 5 | February 01, 2021 | unlicense | Python | ||||
A lightweight library for working with PAF (Pairwise mApping Format) files | ||||||||||
Echolocator | 20 | a year ago | 10 | mit | R | |||||
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets. |