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TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

Workshop Rnaseq ⭐ 30

Workshop • Analysis of RNA-seq data

Ngsparalog ⭐ 9

Copy number variation detection using NGS data.

Pcap Core ⭐ 6

NGS reference implementations and helper code for mapping (originally part of ICGC-TCGA-PanCancer)

Fastq To Bam ⭐ 5

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

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