Tadbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Tadbit | 89 | a year ago | 58 | gpl-3.0 | Python | |||||
| TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models | ||||||||||
| Lazyalgebra.jl | 14 | 2 years ago | 2 | other | Julia | |||||
| A Julia package to extend the notion of vectors and matrices | ||||||||||
| Student Microbiome Project | 8 | 11 years ago | 15 | Python | ||||||
| Central repository for data and analysis tools for the StudentMicrobiomeProject. | ||||||||||
| Mappingohdsi2hdf5 | 6 | 7 months ago | Jupyter Notebook | |||||||
| Build JSON mappings for mapping OHDSI tables to HDF5 | ||||||||||
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