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Search results for pipeline ngs
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64 search results found
Galaxy
⭐
1,211
Data intensive science for everyone.
Juicer
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313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Ugene
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190
UGENE is free open-source cross-platform bioinformatics software
Cloud Pipeline
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137
Cloud agnostic genomics analysis, scientific computation and storage platform
Sequana
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136
Sequana: a set of Snakemake NGS pipelines
Seq2science
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132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Viral Ngs
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129
Viral genomics analysis pipelines
Cloops
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99
Accurate and flexible loops calling tool for 3D genomic data.
Ngseasy
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76
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
Callings Nf
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76
GATK RNA-Seq Variant Calling in Nextflow
Rapt
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51
Read Assembly and Annotation Pipeline Tool
Viral Pipelines
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48
viral-ngs: complete pipelines
Impact Pipeline
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47
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
Asap
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46
A scalable bacterial genome assembly, annotation and analysis pipeline
Pipeliner
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44
An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.
Struo2
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42
Scalable creating/updating of metagenome profiling databases
Migec
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40
A RepSeq processing swiss-knife
Struo
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40
Ley Lab MetaGenome Profiler DataBase generator
Needlestack
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39
Multi-sample somatic variant caller
Ngstools
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37
Next-Generation Sequencing(NGS) toolkits.
Dnascan
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36
DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.
Grape Nf
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35
An automated RNA-seq pipeline using Nextflow
Iarc Nf
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35
List of IARC bioinformatics nextflow pipelines
Mtbseq_source
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32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Circrna
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32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Ngs_pipeline
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31
Exome/Capture/RNASeq Pipeline Implementation using snakemake
Pgcgap
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29
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
Atacseq_pipeline
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25
Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline extended by downstream quantification and annotation steps using bash and Python.
Ctdna Pipeline
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24
A simplified pipeline for ctDNA sequencing data analysis
Ngs Preprocess
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23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Molgenis Pipelines
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20
Pipelines for NGS, imputation, gwas, ...
Rnaseq Nf
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20
RNAseq analysis pipeline
Kgwasflow
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19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Ngspipe2go
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19
a set of NGS pipelines
Rnaseq Pipeline
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18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
Gatk4_best_practice
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18
GATK4 Best Practice Nextflow Pipeline
Fastquick
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18
Ultra Fast NGS Data QC Tool
Toggle
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18
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
Open_pipelines
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17
Pipelines for NGS data preprocessing by the Bock lab and friends
Crisprseq
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17
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
Hgtseq
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17
A pipeline to investigate horizontal gene transfer from NGS data
Tracespipe
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16
Reconstruction and analysis of viral and host genomes at multi-organ level
Virapipe
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13
ViraPipe is a Apache Spark based scalable pipeline for metagenome analysis from NGS read data
Chip Nf
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13
An automated ChIP-seq pipeline using Nextfow
Rnaseq
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13
RNA-seq, QC and differential analysis pipeline
Ngs Pipeline
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12
Pipeline for Somatic Variant Calling with WES and WGS data
Deepvariant On Spark
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11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
Pgkb Ngs Pipeline
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10
PharmGKB NGS Pipeline
Assnake
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10
Snakemake based framework for NGS data analysis and management
Monsda
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10
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis
Workflows
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10
snakemake-based workflows
4pipe4
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10
A NGS data analysis pipeline with emphasis on SNP detection
Banzai Microbialgenomics Pipeline
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10
Banzai is a Microbial Genomics Next Generation Sequencing (NGS) Pipeline Tool developed within Dr Scott Beatson’s Group at the University of Queensland
Iseq
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9
An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data
Seqprocess
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8
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
Ansible Pipelines
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8
Viral Assemble
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8
viral-ngs: genome assembly and scaffolding
Ngs Pipeline
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8
All kinds of NGS analysis pipeline
Nextflow_pipelines
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8
The set of NGS processing pipelines used at Babraham
Cowwid
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7
Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.
Ngs580 Nf
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7
Target exome sequencing analysis for NYU NGS580 gene panel
Test_tools_single_variation
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7
The pipeline is used for testing different call-variation tools.
Staph B.github.io
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7
Visit the site here: https://staphb.org
Fonda
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7
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
Innovation Impact Pipeline
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7
Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay
Ngs_mapper
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7
Genome Mapping Pipeline
Ngs
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6
Next-generation sequencing analysis pipelines & scrips
Pipeline
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6
Consensus assembly and allele interpretation pipeline.
Ngs_pipelines
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5
Nextflow-based pipelines for typical NGS processing tasks
Kcri Cge Bap
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5
KCRI CGE Bacterial Analysis Pipeline
Cirrus Ngs
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5
Ipsa Nf
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5
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Viral_seq
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5
A Ruby Gem containing bioinformatics tools for processing viral NGS data
Ngspipeline
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5
NGS pipeline
Chunky Pipes
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5
Pipeline Design and Distribution Framework
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