Crisprseq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Galaxy | 1,211 |  | 2 | 23 | 5 months ago | 30 | December 08, 2023 | 2,169 | other | Python |
| Data intensive science for everyone. | ||||||||||
| Juicer | 313 | a year ago | 40 | mit | Shell | |||||
| A One-Click System for Analyzing Loop-Resolution Hi-C Experiments | ||||||||||
| Ugene | 190 | 5 months ago | 6 | gpl-2.0 | C++ | |||||
| UGENE is free open-source cross-platform bioinformatics software | ||||||||||
| Cloud Pipeline | 137 | 5 months ago | 840 | apache-2.0 | Java | |||||
| Cloud agnostic genomics analysis, scientific computation and storage platform | ||||||||||
| Sequana | 136 |  | 8 | 6 months ago | 90 | December 06, 2023 | 12 | bsd-3-clause | Jupyter Notebook | |
| Sequana: a set of Snakemake NGS pipelines | ||||||||||
| Seq2science | 132 | 7 months ago | 18 | mit | Python | |||||
| Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data. | ||||||||||
| Viral Ngs | 129 | 4 years ago | 60 | other | Python | |||||
| Viral genomics analysis pipelines | ||||||||||
| Cloops | 99 | 2 years ago | mit | Python | ||||||
| Accurate and flexible loops calling tool for 3D genomic data. | ||||||||||
| Ngseasy | 76 | 7 years ago | 9 | gpl-2.0 | Shell | |||||
| Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation) | ||||||||||
| Callings Nf | 76 | 3 years ago | 5 | mpl-2.0 | Nextflow | |||||
| GATK RNA-Seq Variant Calling in Nextflow | ||||||||||
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Ngs