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Search results for ngs nextflow

19 search results found

Callings Nf ⭐ 76

GATK RNA-Seq Variant Calling in Nextflow

Needlestack ⭐ 39

Multi-sample somatic variant caller

List of IARC bioinformatics nextflow pipelines

Grape Nf ⭐ 35

An automated RNA-seq pipeline using Nextflow

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Ngs Preprocess ⭐ 23

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

Rnaseq Nf ⭐ 20

RNAseq analysis pipeline

Gatk4_best_practice ⭐ 18

GATK4 Best Practice Nextflow Pipeline

Alignment Nf ⭐ 18

Whole Exome/Whole Genome Sequencing alignment pipeline

A pipeline to investigate horizontal gene transfer from NGS data

Crisprseq ⭐ 17

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

Covigator Ngs Pipeline ⭐ 15

A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

Grandeur ⭐ 13

UPHL's Reference Free Pipeline

An automated ChIP-seq pipeline using Nextfow

Bioinformatics ⭐ 10

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.

MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis

Nextflow_pipelines ⭐ 8

The set of NGS processing pipelines used at Babraham

Ngs580 Nf ⭐ 7

Target exome sequencing analysis for NYU NGS580 gene panel

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

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