Awesome Open Source

Programming Languages

Search results for r ngs

33 search results found

Ngsplot ⭐ 231

Quick mining and visualization of NGS data by integrating genomic databases

R package for analyzing single-cell RNA-seq data

Ngstools ⭐ 142

Programs to analyse NGS data for population genetics purposes

Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

Systempiper ⭐ 45

Project Website:

Needlestack ⭐ 39

Multi-sample somatic variant caller

Mapdamage ⭐ 37

mapDamage: tracking and quantifying damage patterns in ancient DNA sequences

Read specialized NGS formats as data frames in R, Python, and more.

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

Csbb Shiny ⭐ 28

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

Ngs Filters ⭐ 25

Filters for false-positive mutation calls in NGS

Rna Seq Tutorial For Gene Differential Expression Analysis ⭐ 24

This tutorial is created for educational purpose

Ngstools ⭐ 23

My own tools code for NGS data analysis (Next Generation Sequencing)

Flexible Genotyping of Polyploids using Next Generation Sequencing Data

Ngspipe2go ⭐ 19

a set of NGS pipelines

Ctdnatools ⭐ 17

R package to work with ctDNA sequencing data

Copenhagen ⭐ 17

Analysis of genotyping and next-generation sequencing data in medical and population genetics

A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.

A set of command line tools based on R and JavaScript.

RNA-seq, QC and differential analysis pipeline

Nu Ngs01 ⭐ 13

NGS-1 Data analysis course

Angsd Wrapper ⭐ 13

Utilities for analyzing next generation sequencing data.

Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"

Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.

Big Data Bowl ⭐ 10

Replication code for my NFL Data Bowl submission

Panelcn.mops ⭐ 9

CNV detection tool for targeted NGS panel data

Ngs_te_mapper ⭐ 9

Software for detecting transposable element insertions from next-generation sequencing data

Seqprocess ⭐ 8

SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package

A tutorial on structural variant calling for short read sequencing data

Tumor-only variant calling

Automated Pipeline for Variant/Haplotype Calling and Filtering

Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations

Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer

Related Searches

R Rstats (2,342)

R Rstudio (1,746)

R Dataset (1,493)

Python R (1,244)

R Machine Learning (1,113)

R Visualization (979)

R Statistics (971)

1-33 of 33 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.