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Search results for variants ngs
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variants
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6 search results found
Deepvariant
⭐
2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Mutscan
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127
Detect and visualize target mutations by scanning FastQ files directly
Rvtests
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95
Rare variant test software for next generation sequencing data
Ngs Pipe
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87
NGS-pipe: next-generation sequencing pipelines for precision oncology
Tbprofiler
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81
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Callings Nf
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76
GATK RNA-Seq Variant Calling in Nextflow
Bayestyper
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52
A method for variant graph genotyping based on exact alignment of k-mers
Needlestack
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39
Multi-sample somatic variant caller
Ococo
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39
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
Iarc Nf
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35
List of IARC bioinformatics nextflow pipelines
Mtbseq_source
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32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Bio Dockers
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32
🐳 Bio-dockers: dockerized bioinformatic tools
Mindthegap
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30
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
Ngs Filters
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25
Filters for false-positive mutation calls in NGS
Ngs Course.github.io
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23
NGS course
Pathos
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22
PathOS is a clinical application for filtering, analysing and reporting on NGS variants
Svcollector
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17
Method to optimally select samples for validation and resequencing
Garfield Ngs
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16
GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS
Icallsv
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16
A Framework to call Structural Variants from NGS based datasets
Ngs_dna
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13
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
Lava
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13
LAVA: Lightweight Assignment of Variant Alleles
Ebaii
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12
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
Cava
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12
CAVA (Clinical Annotation of VAriants)
Ngs Pipeline
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12
Pipeline for Somatic Variant Calling with WES and WGS data
Deepvariant On Spark
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11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
Variantconvert
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9
A customizable genetic variants file format converter.
Vc
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8
A tutorial on structural variant calling for short read sequencing data
Malva
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7
genotyping by Mapping-free ALternate-allele detection of known VAriants
Fonda
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7
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
Fings
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6
Filters for Next Generation Sequencing
Quasitools
⭐
6
Quasitools is a collection of tools for analysing viral quasispecies data.
2019genomicsepidemiologyworkshop
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6
2019 Genomics Epidemiology Workshop at Academia Sinica
Knime_seqan_workflows
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5
KNIME example workflows for NGS data analysis with SeqAn apps.
Wecall
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5
Fast, accurate and simple to use command line tool for variant detection in NGS data.
Varcall2015
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5
Materials for the VarCall2015 course
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