Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Htslib | 762 | 1 | a month ago | 11 | June 14, 2023 | 160 | other | C | ||
C library for high-throughput sequencing data formats | ||||||||||
Htsjdk | 271 | 170 | 87 | 4 months ago | 78 | October 13, 2023 | 303 | Java | ||
A Java API for high-throughput sequencing data (HTS) formats. | ||||||||||
Mutscan | 127 | 2 years ago | 4 | mit | C | |||||
Detect and visualize target mutations by scanning FastQ files directly | ||||||||||
Ngscheckmate | 106 | 8 months ago | 24 | mit | Python | |||||
Software program for checking sample matching for NGS data | ||||||||||
Haplogrep Cmd | 64 | a year ago | 16 | mit | Java | |||||
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS. | ||||||||||
Opengene.jl | 61 | 2 years ago | 8 | other | Julia | |||||
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia | ||||||||||
Snpsplit | 43 | a year ago | 2 | gpl-3.0 | Perl | |||||
Allele-specific alignment sorting | ||||||||||
Disq | 31 | 3 | 8 months ago | 10 | February 09, 2021 | 17 | mit | Java | ||
A library for manipulating bioinformatics sequencing formats in Apache Spark | ||||||||||
Rnaseq Nf | 20 | 2 years ago | 4 | gpl-3.0 | HTML | |||||
RNAseq analysis pipeline | ||||||||||
Alignment Nf | 18 | 3 years ago | 6 | gpl-3.0 | Nextflow | |||||
Whole Exome/Whole Genome Sequencing alignment pipeline |