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Search results for c plus plus ngs
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40 search results found
Fastp
⭐
1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
Sortmerna
⭐
220
SortMeRNA: next-generation sequence filtering and alignment tool
Ugene
⭐
190
UGENE is free open-source cross-platform bioinformatics software
Ngs Bits
⭐
121
Short-read sequencing tools
Ngs
⭐
114
NGS Language Bindings
Gencore
⭐
103
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
Ngs Tools
⭐
99
Rvtests
⭐
95
Rare variant test software for next generation sequencing data
Bwa Meme
⭐
92
BWA-MEME: Faster BWA-MEM2 using learned-index
Tpmcalculator
⭐
74
TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
Fastv
⭐
56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Bayestyper
⭐
52
A method for variant graph genotyping based on exact alignment of k-mers
Consent
⭐
40
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Ococo
⭐
39
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
Gamgee
⭐
39
A C++14 library for NGS data formats
Ngsld
⭐
33
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
Mindthegap
⭐
30
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
Gam Ngs
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26
Genomic Assemblies Merger for NGS
Fda Hive
⭐
25
FDA High-performance Integrated Virtual Environment (HIVE)
Biokanga
⭐
22
An integrated high performance bioinformatics toolkit
Haploclique
⭐
21
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
Fastquick
⭐
18
Ultra Fast NGS Data QC Tool
Nanovar Archived
⭐
17
Archived version 1.0.2
Svcollector
⭐
17
Method to optimally select samples for validation and resequencing
Ngsf Hmm
⭐
13
Estimation of per-individual inbreeding tracts under a probabilistic framework
Sting
⭐
12
Ultrafast sequence typing and gene detection from NGS raw reads
Nsearch
⭐
10
Next-Generation Sequencing (NGS) Data Processing Tool & Library
Ngsdist
⭐
9
Estimation of pairwise distances under a probabilistic framework
Ngsparalog
⭐
9
Copy number variation detection using NGS data.
Hg Color
⭐
9
Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads
Plast Library
⭐
8
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations.
Ngs_server
⭐
7
Ultra Lightweight NGS (BAM/VCF) Server
Transgener
⭐
6
Transgene integration and rearrangement discovery using NGS
Ngs Petsc
⭐
6
NGSolve-PETSc Interface
Ngsplusplus
⭐
6
Ngshmmalign
⭐
5
ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and HCV) that experience substantial biological insertions and deletions
Eagler
⭐
5
Eliminating Assembly Gaps by Long read Extension
Kit4b
⭐
5
A fully integrated K-mer Informed Toolkit for Bioinformatics
Mutationseq
⭐
5
Software for somatic SNV detection using next generation sequencing (NGS) data.
Wecall
⭐
5
Fast, accurate and simple to use command line tool for variant detection in NGS data.
Heap
⭐
5
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