Ngshmmalign
ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and HCV) that experience substantial biological insertions and deletions
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| V Pipe | 119 | 4 months ago | 27 | apache-2.0 | Jupyter Notebook | |||||
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| Fastv | 56 | 4 years ago | 1 | mit | C++ | |||||
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| High-quality Nanopore-only genome polisher | ||||||||||
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| Vapid | 27 | 3 years ago | 3 | other | Shell | |||||
| VAPiD: Viral Annotation and Identification Pipeline | ||||||||||
| Vigen | 24 | a year ago | ||||||||
| viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data | ||||||||||
| Viruspy | 21 | 7 years ago | 5 | mit | Shell | |||||
| A pipeline for viral identification from metagenomic samples | ||||||||||
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| Primer schemes for real-time genome epidemiology | ||||||||||
| Viral Track | 18 | 4 years ago | 4 | mit | R | |||||
| Micropro | 17 | 4 years ago | gpl-3.0 | R | ||||||
| A microbial profiling framework for metagenomic analysis | ||||||||||
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