Project Name	Stars	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Gencore	103	6 months ago			38	mit	C++
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
Ngspeciesid	41	6 months ago	19	December 07, 2021	10	gpl-3.0	Python
Reference-free clustering and consensus forming of long-read amplicon sequencing
Genome Data Integration	35	2 years ago			3		Shell
Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
Alignparse	15	10 months ago			1	other	Jupyter Notebook
Align sequences and then parse features.
Sc2 Illumina Pipeline	14	3 years ago			11	agpl-3.0	Nextflow
Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
Sars Cov 2_multi Pcr_v1.0	12	2 years ago					Perl
SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
Ervcaller	11	4 months ago			13		Perl
ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) in the human genome using next-generation sequencing (NGS) data. We evaluated the tools using both simulated and real benchmark whole-genome sequencing (WGS) datasets. ERVcaller is capable to accurately detect various TE insertions of any lengths, particularly ERVs. It allows for the use of a TE reference library regardless of sequence complexity, such as the entire RepBase database. It is easy to install and use with command lines.
Quagmir	9	6 years ago				mit	Python
A python-based isomiR quantification and analysis pipeline
Drisee	9	10 years ago			1	other	Python
duplicate read inferred sequencing error estimator
Flea Pipeline	5	6 years ago			17	other	Python
A pipeline for long-read sequencing data.

Alternatives To Gencore

Select To Compare

Gencore ⭐ 103

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

most recent commit 6 months ago

Ngspeciesid ⭐ 41

Reference-free clustering and consensus forming of long-read amplicon sequencing

total releases 19most recent commit 6 months ago

Genome Data Integration ⭐ 35

Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls

most recent commit 2 years ago

Alignparse ⭐ 15

Align sequences and then parse features.

most recent commit 10 months ago

Sc2 Illumina Pipeline ⭐ 14

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

most recent commit 3 years ago

Sars Cov 2_multi Pcr_v1.0 ⭐ 12

SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data

most recent commit 2 years ago

Ervcaller ⭐ 11

ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) in the human genome using next-generation sequencing (NGS) data. We evaluated the tools using both simulated and real benchmark whole-genome sequencing (WGS) datasets. ERVcaller is capable to accurately detect various TE insertions of any lengths, particularly ERVs. It allows for the use of a TE reference library regardless of sequence complexi

most recent commit 4 months ago

Quagmir ⭐ 9

A python-based isomiR quantification and analysis pipeline

most recent commit 6 years ago

Drisee ⭐ 9

duplicate read inferred sequencing error estimator

most recent commit 10 years ago

Flea Pipeline ⭐ 5

A pipeline for long-read sequencing data.

most recent commit 6 years ago

Suggest An Alternative To gencore

Alternative Project Comparisons

Gencore vs Ngspeciesid

Gencore vs Genome Data Integration

Gencore vs Alignparse

Gencore vs Sc2 Illumina Pipeline

Gencore vs Sars Cov 2_multi Pcr_v1.0

Gencore vs Ervcaller

Gencore vs Quagmir

Gencore vs Drisee

Gencore vs Flea Pipeline

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