Scrubby
Background depletion/extraction using k-mer and/or alignment methods 🐼
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Bedops | 244 | 2 years ago | 1 | March 03, 2021 | 17 | other | C | |||
| :microscope: BEDOPS: high-performance genomic feature operations | ||||||||||
| Oswitch | 75 | 7 years ago | 8 | June 25, 2017 | 13 | Ruby | ||||
| Provides access to complex Bioinformatics software (even BioLinux!) in just one command. | ||||||||||
| Bio Ansible | 22 | 5 months ago | apache-2.0 | Jinja | ||||||
| Proof of concept to use ansible + Lmod to deploy a bioinformatics server | ||||||||||
| Amon | 17 | 4 months ago | 3 | December 02, 2019 | 4 | mit | Python | |||
| Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data | ||||||||||
| Phat | 17 | 2 years ago | 62 | gpl-3.0 | TypeScript | |||||
| Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform | ||||||||||
| Phagehosts | 11 | 3 years ago | mit | Python | ||||||
| This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computational approaches to predict bacteriophage–host relationships. FEMS Microbiology Reviews doi: 10.1093/femsre/fuv048 | ||||||||||
| Scrubby | 7 | a year ago | 3 | apache-2.0 | Rust | |||||
| Background depletion/extraction using k-mer and/or alignment methods :panda_face: | ||||||||||
| Circtest | 6 | 5 years ago | 1 | R | ||||||
| CircRNA testing and ploting R package | ||||||||||
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