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8 search results found

Krakenuniq ⭐ 201

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

Reference-based consensus creation

Kraken Biom ⭐ 33

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

Code Safety Inspection Service

Metasub_cap ⭐ 16

A comprehensive pipeline for short read metagenomic data

Background depletion/extraction using k-mer and/or alignment methods 🐼

Pipelines ⭐ 5

Conveyor-based analysis pipelines for metagenome data

Stringmeup ⭐ 5

A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.

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