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Search results for metagenomics taxonomy

15 search results found

Mmseqs2 ⭐ 1,235

MMseqs2: ultra fast and sensitive search and clustering suite

Accurate sample inference from amplicon data with single nucleotide resolution

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

Metacoder ⭐ 121

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

Metabuli ⭐ 54

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

Metacache ⭐ 49

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Kraken Biom ⭐ 33

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

Metameta ⭐ 18

Whokaryote ⭐ 17

Classify metagenomic contigs as eukaryotic or prokaryotic

Cenote Taker ⭐ 14

DEPRECATED: Use Cenote-Taker 3 instead

Fast and space-efficient taxonomic classification of long reads

Taxtriage ⭐ 11

TaxTriage is designed in concordance with CDC recommendations to provide clinical environments the necessary tools to generate classification reports (using Kraken2) in a metagenomics scope. It is bundled with Nextflow to provide a seamless installation and usage experience. It is currently being developed as an alpha version and is intended for a full release by October of 2022

Background depletion/extraction using k-mer and/or alignment methods 🐼

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