Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
V Pipe | 119 | 6 months ago | 27 | apache-2.0 | Jupyter Notebook | |||||
V-pipe is a pipeline designed for analysing NGS data of short viral genomes | ||||||||||
Fastv | 56 | 4 years ago | 1 | mit | C++ | |||||
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19. | ||||||||||
Homopolish | 53 | a year ago | 9 | gpl-3.0 | Python | |||||
High-quality Nanopore-only genome polisher | ||||||||||
Uniquekmer | 33 | 2 years ago | 3 | mit | C | |||||
Generate unique KMERs for every contig in a FASTA file | ||||||||||
Vapid | 27 | 3 years ago | 3 | other | Shell | |||||
VAPiD: Viral Annotation and Identification Pipeline | ||||||||||
Vigen | 24 | a year ago | ||||||||
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data | ||||||||||
Viruspy | 21 | 7 years ago | 5 | mit | Shell | |||||
A pipeline for viral identification from metagenomic samples | ||||||||||
Primer Schemes | 20 | a year ago | 1 | cc-by-4.0 | Python | |||||
Primer schemes for real-time genome epidemiology | ||||||||||
Viral Track | 18 | 4 years ago | 4 | mit | R | |||||
Micropro | 17 | 4 years ago | gpl-3.0 | R | ||||||
A microbial profiling framework for metagenomic analysis |