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Search results for virus metagenomics

9 search results found

Viralrecon ⭐ 101

Assembly and intrahost/low-frequency variant calling for viral samples

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

Prophyle ⭐ 30

Accurate, resource-frugal and deterministic DNA sequence classifier.

Pathogentrack ⭐ 22

A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.

A pipeline for viral identification from metagenomic samples

Tracespipe ⭐ 16

Reconstruction and analysis of viral and host genomes at multi-organ level

Virstrain ⭐ 16

An RNA virus strain-level identification tool for short reads.

Virus metagenomic pipeline for unknown host or in absence of a host genome

Cenote Taker ⭐ 14

DEPRECATED: Use Cenote-Taker 3 instead

Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.

Assembly and intrahost / low-frequency variant calling for viral samples

Virus_detection_sra ⭐ 10

Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

Sars Cov2_analysis ⭐ 5

Documentation for analyzing SARS-Cov2 samples.

🦠🧬 Unraveling Viral Genomes from Metagenomes

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