Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Virsorter2 | 143 | 10 months ago | 75 | gpl-2.0 | Python | |||||
customizable pipeline to identify viral sequences from (meta)genomic data | ||||||||||
Viralrecon | 101 | 7 months ago | 27 | mit | Nextflow | |||||
Assembly and intrahost/low-frequency variant calling for viral samples | ||||||||||
Emg Viral Pipeline | 98 | 8 months ago | 19 | apache-2.0 | Python | |||||
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies | ||||||||||
Zika Rnaseq Pipeline | 73 | 5 years ago | 5 | Jupyter Notebook | ||||||
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study | ||||||||||
Vip | 22 | 7 years ago | 9 | Perl | ||||||
Tracespipe | 16 | 10 months ago | gpl-3.0 | Shell | ||||||
Reconstruction and analysis of viral and host genomes at multi-organ level | ||||||||||
Metavic | 15 | 5 years ago | gpl-3.0 | Shell | ||||||
Virus metagenomic pipeline for unknown host or in absence of a host genome | ||||||||||
Micall | 14 | 6 months ago | 141 | agpl-3.0 | Python | |||||
Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C | ||||||||||
Zika Seq | 12 | 5 years ago | 6 | Python | ||||||
Pipelines to do MinION sequencing of Zika virus | ||||||||||
Vipr | 10 | 4 years ago | 18 | mit | Nextflow | |||||
Assembly and intrahost / low-frequency variant calling for viral samples |