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33 search results found

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

Homopolish ⭐ 53

High-quality Nanopore-only genome polisher

Uniquekmer ⭐ 33

Generate unique KMERs for every contig in a FASTA file

VAPiD: Viral Annotation and Identification Pipeline

viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data

A pipeline for viral identification from metagenomic samples

Primer Schemes ⭐ 20

Primer schemes for real-time genome epidemiology

Viral Track ⭐ 18

Micropro ⭐ 17

A microbial profiling framework for metagenomic analysis

Virulign ⭐ 17

VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Genomics ⭐ 17

Analysis of Ebola virus genomes

Tracespipe ⭐ 16

Reconstruction and analysis of viral and host genomes at multi-organ level

Virus metagenomic pipeline for unknown host or in absence of a host genome

Viptreegen ⭐ 15

a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree

Cenote Taker ⭐ 14

DEPRECATED: Use Cenote-Taker 3 instead

Smart Corona_virus_detector ⭐ 13

The aim is to develop a quick way to detect the nCov 2019 (Coronavirus 2019) strain using convolutional neural networks.

Zika Seq ⭐ 12

Pipelines to do MinION sequencing of Zika virus

Virhostmatcher Net ⭐ 12

VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.

A bioinformatics tool for SV detection and virus integration discovery

Map_viruses ⭐ 9

Align short reads against viral genomes in protein space

genetic distance plotting for recombination events analysis

A software to detect virome-wide integrations

Detect contigs of complete circular genomes

Polyidus provides a framework to catch chimeric DNA sequences with a tale of python

Ebola On Ethereum ⭐ 7

This is a smart contract on the Ethereum blockchain that delivers a URL to a text file of the the ebola virus genome hosted on Swarm (decentralized storage).

HIV integration project

Virus_graphs ⭐ 6

Making Representative Genome Graphs from Eukaryotic Viruses and Phages

Denv Genomics ⭐ 5

Curated dengue virus (serotypes 1-4) coding-complete genomes and metadata from GenBank.

Kodoja: identifying viruses from plant RNA sequencing data

Ngshmmalign ⭐ 5

ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and HCV) that experience substantial biological insertions and deletions

RNA-seq pipeline to detect viral reads

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