Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Serratus | 219 | a year ago | 36 | gpl-3.0 | Jupyter Notebook | |||||
Ultra-deep search for novel viruses | ||||||||||
Nextclade | 190 | 2 | 4 months ago | 52 | April 27, 2022 | 154 | mit | TypeScript | ||
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement | ||||||||||
V Pipe | 119 | 4 months ago | 27 | apache-2.0 | Jupyter Notebook | |||||
V-pipe is a pipeline designed for analysing NGS data of short viral genomes | ||||||||||
Fastv | 56 | 4 years ago | 1 | mit | C++ | |||||
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19. | ||||||||||
Virtool | 41 | 4 months ago | 9 | mit | Python | |||||
Viral infection diagnostics using next-generation sequencing | ||||||||||
Iva | 37 | 3 years ago | 16 | January 25, 2018 | 9 | gpl-3.0 | Python | |||
de novo virus assembler of Illumina paired reads | ||||||||||
Uniquekmer | 33 | 2 years ago | 3 | mit | C | |||||
Generate unique KMERs for every contig in a FASTA file | ||||||||||
Varvamp | 15 | 4 months ago | 15 | November 20, 2023 | gpl-3.0 | Python | ||||
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses. | ||||||||||
Zika Seq | 12 | 5 years ago | 6 | Python | ||||||
Pipelines to do MinION sequencing of Zika virus | ||||||||||
Diversitools | 10 | a year ago | 6 | gpl-3.0 | Perl | |||||
Tool for analysing viral diversity from High Throughput Sequencing |