Varvamp

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

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License

gpl-3.0

Open Issues

Most Recent Commit

3 months ago

Programming Language

Python

Total Releases

Latest Release

November 20, 2023

Categories

Programming Languages > Python

Science > Sequencing

Security > Virus

Repo

Alternatives To Varvamp

Project Name	Stars	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Serratus	219		a year ago			36	gpl-3.0	Jupyter Notebook
Ultra-deep search for novel viruses
Nextclade	190	2	3 months ago	52	April 27, 2022	154	mit	TypeScript
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
V Pipe	119		4 months ago			27	apache-2.0	Jupyter Notebook
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Fastv	56		4 years ago			1	mit	C++
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Virtool	41		3 months ago			9	mit	Python
Viral infection diagnostics using next-generation sequencing
Iva	37		3 years ago	16	January 25, 2018	9	gpl-3.0	Python
de novo virus assembler of Illumina paired reads
Uniquekmer	33		2 years ago			3	mit	C
Generate unique KMERs for every contig in a FASTA file
Varvamp	15		3 months ago	15	November 20, 2023		gpl-3.0	Python
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Zika Seq	12		5 years ago			6		Python
Pipelines to do MinION sequencing of Zika virus
Diversitools	10		a year ago			6	gpl-3.0	Perl
Tool for analysing viral diversity from High Throughput Sequencing

Alternatives To Varvamp

Select To Compare

Serratus ⭐ 219

Ultra-deep search for novel viruses

most recent commit a year ago

Nextclade ⭐ 190

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

dependent packages 2total releases 52most recent commit 3 months ago

V Pipe ⭐ 119

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

most recent commit 4 months ago

Fastv ⭐ 56

An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.

most recent commit 4 years ago

Virtool ⭐ 41

Viral infection diagnostics using next-generation sequencing

most recent commit 3 months ago

Iva ⭐ 37

de novo virus assembler of Illumina paired reads

total releases 16most recent commit 3 years ago

Uniquekmer ⭐ 33

Generate unique KMERs for every contig in a FASTA file

most recent commit 2 years ago

Varvamp ⭐ 15

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

total releases 15most recent commit 3 months ago

Zika Seq ⭐ 12

Pipelines to do MinION sequencing of Zika virus

most recent commit 5 years ago

Diversitools ⭐ 10

Tool for analysing viral diversity from High Throughput Sequencing

most recent commit a year ago

Suggest An Alternative To varVAMP

Alternative Project Comparisons

Varvamp vs Uniquekmer

Varvamp vs Zika Seq

Varvamp vs Diversitools

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