Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Serratus | 219 | a year ago | 36 | gpl-3.0 | Jupyter Notebook | |||||
Ultra-deep search for novel viruses | ||||||||||
V Pipe | 119 | 3 months ago | 27 | apache-2.0 | Jupyter Notebook | |||||
V-pipe is a pipeline designed for analysing NGS data of short viral genomes | ||||||||||
Fastv | 56 | 3 years ago | 1 | mit | C++ | |||||
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19. | ||||||||||
Virtool | 41 | 2 months ago | 9 | mit | Python | |||||
Viral infection diagnostics using next-generation sequencing | ||||||||||
Iva | 37 | 3 years ago | 16 | January 25, 2018 | 9 | gpl-3.0 | Python | |||
de novo virus assembler of Illumina paired reads | ||||||||||
Uniquekmer | 33 | 2 years ago | 3 | mit | C | |||||
Generate unique KMERs for every contig in a FASTA file | ||||||||||
Prophyle | 30 | 4 months ago | 53 | August 23, 2021 | 41 | mit | Python | |||
Accurate, resource-frugal and deterministic DNA sequence classifier. | ||||||||||
Virtus | 28 | 2 years ago | 4 | other | Common Workflow Language | |||||
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing. | ||||||||||
Vapid | 27 | 3 years ago | 3 | other | Shell | |||||
VAPiD: Viral Annotation and Identification Pipeline | ||||||||||
Vigen | 24 | a year ago | ||||||||
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data |