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Search results for genome metagenomics
genome
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metagenomics
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39 search results found
Megahit
⭐
442
Ultra-fast and memory-efficient (meta-)genome assembler
Gtdbtk
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383
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Krakenuniq
⭐
201
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
Drep
⭐
199
Rapid comparison and dereplication of genomes
Biomartr
⭐
198
Genomic Data Retrieval with R
Insilicoseq
⭐
158
🚀 A sequencing simulator
Metagem
⭐
155
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Dashing
⭐
147
Fast and accurate genomic distances using HyperLogLog
Eager
⭐
112
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Ganon
⭐
73
ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more
Bonsai
⭐
68
Bonsai: Fast, flexible taxonomic analysis and classification
Catch
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63
A package for designing compact and comprehensive capture probe sets.
Ancientmetagenomedir
⭐
61
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
Woltka
⭐
58
Woltka: a versatile meta'omic data classifier
Fastv
⭐
56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
Metacache
⭐
49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Metachip
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42
Horizontal gene transfer (HGT) identification pipeline
Struo
⭐
40
Ley Lab MetaGenome Profiler DataBase generator
Charcoal
⭐
31
Remove contaminated contigs from genomes using k-mers and taxonomies.
Fegenie
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29
HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
Spraynpray
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25
Rapid and simple taxonomic profiling of genome and metagenome contigs
Binning_refiner
⭐
22
Improving genome bins through the combination of different binning programs
Viruspy
⭐
21
A pipeline for viral identification from metagenomic samples
Metator
⭐
20
Metagenomic binning based on Hi-C data
Metameta
⭐
18
Tracespipe
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16
Reconstruction and analysis of viral and host genomes at multi-organ level
Metavic
⭐
15
Virus metagenomic pipeline for unknown host or in absence of a host genome
Cenote Taker
⭐
14
DEPRECATED: Use Cenote-Taker 3 instead
Virmet
⭐
13
Set of tools for viral metagenomics.
Ebi Metagenomics
⭐
12
Automatically exported from code.google.com/p/ebi-metagenomics
Minys
⭐
11
MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.
Blast Filtering Pipeline
⭐
10
A very simple BLAST filtering pipeline
Raspir
⭐
10
Raspir, the rare species identifier
Plasmidminer
⭐
10
🔍 in silico plasmid extraction
Despi
⭐
8
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
Hgtsim
⭐
8
A simulator for horizontal gene transfer (HGT) in microbial communities
Mglex
⭐
6
MGLEX – A Python Package for Probabilistic Modeling and Binning of Metagenomes
K2mem
⭐
6
K2Mem is a variant of Kraken 2 taxonomic sequence classification system that can learn from the previous classifications.
Adrsm
⭐
5
Ancient DNA Read Simulator for Metagenomic
Metagenomics Tutorials
⭐
5
Additional scripts from tutorials on tylerbarnum.com
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1-39 of 39 search results
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