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Search results for kraken metagenomics

12 search results found

🌈 Interactive analysis of metagenomics data

Krakenuniq ⭐ 201

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

Sunbeam ⭐ 157

A robust, extensible metagenomics pipeline

Recentrifuge ⭐ 83

Recentrifuge: robust comparative analysis and contamination removal for metagenomics

Metagenomics Index Correction ⭐ 67

Kraken Biom ⭐ 33

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

Metameta ⭐ 18

Metasub_cap ⭐ 16

A comprehensive pipeline for short read metagenomic data

Findfungi ⭐ 7

A pipeline for the identification of fungi in public metagenomics datasets

Background depletion/extraction using k-mer and/or alignment methods 🐼

K2Mem is a variant of Kraken 2 taxonomic sequence classification system that can learn from the previous classifications.

Pipelines ⭐ 5

Conveyor-based analysis pipelines for metagenome data

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1-12 of 12 search results

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