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🔬 BEDOPS: high-performance genomic feature operations

Provides access to complex Bioinformatics software (even BioLinux!) in just one command.

Bio Ansible ⭐ 22

Proof of concept to use ansible + Lmod to deploy a bioinformatics server

Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host with or without metabolomics data

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Phagehosts ⭐ 11

This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computational approaches to predict bacteriophage–host relationships. FEMS Microbiology Reviews doi: 10.1093/femsre/fuv048

Background depletion/extraction using k-mer and/or alignment methods 🐼

CircRNA testing and ploting R package

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