Vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Vcf2phylip | 216 | a year ago | 4 | gpl-3.0 | Python | |||||
| Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis | ||||||||||
| Sigprofilerextractor | 132 |  | 3 | 7 months ago | 50 | November 21, 2023 | 1 | bsd-2-clause | Python | |
| SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. | ||||||||||
| Local_pca | 59 | a year ago | 2 | HTML | ||||||
| Methods for examining PCA locally along the genome. | ||||||||||
| Helmsman | 19 | 3 years ago | 3 | mit | Python | |||||
| highly-efficient & lightweight mutation signature matrix aggregation | ||||||||||
| Multivariantviewer | 6 | 5 years ago | 3 | JavaScript | ||||||
| A JBrowse plugin with a custom variant track for multi-VCF files and optionally plotting LD scores | ||||||||||
Alternatives To Vcf2phylipSelect To Compare
Alternative Project Comparisons
Popular Vcf Projects
Popular Matrix Projects
Popular Science Categories
Related Searches
Get A Weekly Email With Trending Projects For These Categories
No Spam. Unsubscribe easily at any time.
Python
Matrix
Vcf