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Search results for fasta vcf
fasta
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vcf
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42 search results found
Bioawk
⭐
518
BWK awk modified for biological data
Snippy
⭐
408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
Htsjdk
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271
A Java API for high-throughput sequencing data (HTS) formats.
Vcf2phylip
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216
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Biosyntax
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184
Syntax highlighting for computational biology
Genomics
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154
A collection of scripts and notes related to genomics and bioinformatics
Genozip
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144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Vcf Validator
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125
Validation suite for Variant Call Format (VCF) files, implemented using C++11
Cljam
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87
A DNA Sequence Alignment/Map (SAM) library for Clojure
Haplogrep Cmd
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64
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
Opengene.jl
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61
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
Tiddit
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55
TIDDIT - structural variant calling
Transanno
⭐
54
accurate LiftOver tool for new genome assemblies
Fuc
⭐
38
Frequently used commands in bioinformatics
Svjedi
⭐
36
SV genotyping with long reads
Biotoolbox
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27
Tools for querying and analysis of genomic data
Phenix
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27
Public Health England SNP calling pipeline.
Vcf2fasta
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25
Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
Workshop Popgenome
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19
Tutorial about R package PopGenome
Ekidna
⭐
19
Assembly based core genome SNP alignments for bacteria
Varifier
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13
Variant call verification
Vsnp
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13
vSNP -- validate SNPs
Hadoopcnv
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12
HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data
Vbt Trioanalysis
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10
Psmcr
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9
R Port of psmc
Gsalign
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9
GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
Seq Collection
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9
Psite
⭐
9
Simulate next-generation sequencing reads for tumor samples
Bioscripts
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9
Scripts for bioinformatics data processing and analysis
Vcf2aln
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8
Script to convert multi-sample VCFs to FASTA alignments
Biocpp Io
⭐
8
BioC++ Input/Output library
Super Minityper
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7
Long Read SVs
Script_collection
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7
Collection of scripts to solve small bioinformatic challenges.
Popgen
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7
Small scripts for population genetics analysis
Cflib
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6
A library to create and handle counts files used with PoMo.
Popgen
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6
A collection of scripts I wrote when doing population genetics: calculate GC content, perform the McDonald-Kreitman test, calculate Tajima's D, convert VCF files to FASTA files using a reference genome
Broad Fungalgroup
⭐
6
Broad Fungal Genomics group scripts
Aselux
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6
Vcf2diploid
⭐
6
personal genome constructor
Ebt
⭐
6
Evolutionary Bioinformatics Toolkit (EBT)
Svaha
⭐
5
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
Vcf2fas
⭐
5
fasta files from vcf file(s)
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1-42 of 42 search results
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